RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 SLC25A27O95847 323 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 CASP4P49662 377 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 CHSY1Q86X52 802 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 GRAMD1AQ96CP6 724 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 GPR75-ASB3A0A0A6YYF3 556 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 TBX20Q9UMR3 447 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 IL1RL2Q9HB29 575 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 BCORL1Q5H9F3 1711 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 EIF3DO15371 548 aaKnown RBP eCLIP17.96■□□□□ 0.47
PTPRF-209ENST00000438120 PPP1R37O75864 691 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 ZRANB3Q5FWF4 1079 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 PTRHD1Q6GMV3 140 aaKnown RBP17.96■□□□□ 0.47
PTPRF-209ENST00000438120 ANKS3Q6ZW76 656 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.96■□□□□ 0.476e-6■□□□□ 10.5
PTPRF-209ENST00000438120 PGK2P07205 417 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 MYL2P10916 166 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 YY1P25490 414 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 MAGEA4P43358 317 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 RFX5P48382 616 aaPredicted RBP17.96■□□□□ 0.47
PTPRF-209ENST00000438120 FXR2P51116 673 aaKnown RBP eCLIP17.96■□□□□ 0.47
PTPRF-209ENST00000438120 SNX17Q15036 470 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 CYFIP2Q96F07 1278 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 FOPNLQ96NB1 174 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 MYO1GB0I1T2 1018 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 RBP3P10745 1247 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 CARSP49589 748 aaKnown RBP17.96■□□□□ 0.47
PTPRF-209ENST00000438120 RARS2Q5T160 578 aaKnown RBP17.96■□□□□ 0.47
PTPRF-209ENST00000438120 DCP1BQ8IZD4 617 aaKnown RBP17.96■□□□□ 0.47
PTPRF-209ENST00000438120 STKLD1Q8NE28 680 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 THAP2Q9H0W7 228 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 ARL2BPQ9Y2Y0 163 aa17.96■□□□□ 0.47
PTPRF-209ENST00000438120 PPP1R3GB7ZBB8 358 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 NOTUMQ6P988 496 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 CCNI2Q6ZMN8 369 aaPredicted RBP17.95■□□□□ 0.46
PTPRF-209ENST00000438120 LONP2Q86WA8 852 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 ZNF513Q8N8E2 541 aaPredicted RBP17.95■□□□□ 0.46
PTPRF-209ENST00000438120 B4GALNT2Q8NHY0 566 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 PCDHB7Q9Y5E2 793 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 PITPNM2Q9BZ72 1349 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 AIM2O14862 343 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 CDH16O75309 829 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 CETPP11597 493 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 MROH9Q5TGP6 573 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 CHST13Q8NET6 341 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 OR9Q1Q8NGQ5 310 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 FEZF2Q8TBJ5 459 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 ZNF473Q8WTR7 871 aaKnown RBP17.95■□□□□ 0.46
PTPRF-209ENST00000438120 RNF17Q9BXT8 1623 aaKnown RBP17.95■□□□□ 0.46
PTPRF-209ENST00000438120 PCSK1P29120 753 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 THPOP40225 353 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 DMC1Q14565 340 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 NUDT12Q9BQG2 462 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 SMG5Q9UPR3 1016 aaKnown RBP17.95■□□□□ 0.46
PTPRF-209ENST00000438120 TMEM161AQ9NX61 479 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 LRRC23Q53EV4 343 aaPredicted RBP17.95■□□□□ 0.46
PTPRF-209ENST00000438120 SGF29Q96ES7 293 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 ZFYVE19Q96K21 471 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 PRMT6Q96LA8 375 aaPredicted RBP17.95■□□□□ 0.46
PTPRF-209ENST00000438120 GPR63Q9BZJ6 419 aa17.95■□□□□ 0.46
PTPRF-209ENST00000438120 C5orf58C9J3I9 102 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 PSMD3O43242 534 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 AKAP10O43572 662 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 TMEM253P0C7T8 217 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 CHRM3P20309 590 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 PDK1Q15118 436 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 TSPAN17Q96FV3 270 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 SHCBP1LQ9BZQ2 653 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 CATSPERBQ9H7T0 1116 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 DPP3Q9NY33 737 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 TRAF3IP3Q9Y228 551 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 V9GYQ6 96 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 ZBTB17Q13105 803 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 RSAD1Q9HA92 442 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 AGPAT3Q9NRZ7 376 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 PAK5Q9P286 719 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 PCDHB8Q9UN66 801 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 PDIA6Q15084 440 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 LAYNQ6UX15 382 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 C11orf96Q7Z7L8 435 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 PATL1Q86TB9 770 aaKnown RBP17.94■□□□□ 0.46
PTPRF-209ENST00000438120 DOLKQ9UPQ8 538 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 CLEC17AQ6ZS10 378 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 ABHD8Q96I13 439 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 EPN3Q9H201 632 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 SLC24A3Q9HC58 644 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 SLC39A10Q9ULF5 831 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 CDC42BPBQ9Y5S2 1711 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 FAM200BP0CF97 657 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 ACADSBP45954 432 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 HARS2P49590 506 aaKnown RBP17.94■□□□□ 0.46
PTPRF-209ENST00000438120 NFIAQ12857 509 aa17.94■□□□□ 0.46
PTPRF-209ENST00000438120 PMPCBO75439 489 aa17.93■□□□□ 0.46
PTPRF-209ENST00000438120 MED24O75448 989 aa17.93■□□□□ 0.46
PTPRF-209ENST00000438120 SGPL1O95470 568 aa17.93■□□□□ 0.46
PTPRF-209ENST00000438120 POLBP06746 335 aa17.93■□□□□ 0.46
PTPRF-209ENST00000438120 EPHB2P29323 1055 aa17.93■□□□□ 0.46
PTPRF-209ENST00000438120 CLCN3P51790 818 aa17.93■□□□□ 0.46
PTPRF-209ENST00000438120 LVRNQ6Q4G3 990 aa17.93■□□□□ 0.46
PTPRF-209ENST00000438120 ANKRD13AQ8IZ07 590 aa17.93■□□□□ 0.46
PTPRF-209ENST00000438120 ZNF669Q96BR6 464 aaPredicted RBP17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms