RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 TMCO2Q7Z6W1 182 aaPredicted RBP24.54■■□□□ 1.52
CPSF4-204ENST00000436336 ZSCAN30Q86W11 494 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 CMTR2Q8IYT2 770 aaKnown RBP24.54■■□□□ 1.52
CPSF4-204ENST00000436336 ADGRF2Q8IZF7 708 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 TMEM86AQ8N2M4 240 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 PDCL2Q8N4E4 241 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 HASPINQ8TF76 798 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 SLC20A1Q8WUM9 679 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 TMEM176AQ96HP8 235 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP24.54■■□□□ 1.52
CPSF4-204ENST00000436336 COLEC11Q9BWP8 271 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 NT5C1AQ9BXI3 368 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 HMGXB4Q9UGU5 601 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 ADAMTS1Q9UHI8 967 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 FAN1Q9Y2M0 1017 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 PRG3Q9Y2Y8 225 aaPredicted RBP24.54■■□□□ 1.52
CPSF4-204ENST00000436336 NR2E3Q9Y5X4 410 aa24.54■■□□□ 1.52
CPSF4-204ENST00000436336 ITGB1P05556 798 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 ODC1P11926 461 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 TNFAIP3P21580 790 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 BRCC3P46736 316 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 CDR2Q01850 454 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 TOGARAM2Q6ZUX3 1019 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 SLC4A11Q8NBS3 891 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 OR6B3Q8NGW1 331 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 SPATA18Q8TC71 538 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 KIAA1524Q8TCG1 905 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 DDX1Q92499 740 aaKnown RBP24.53■■□□□ 1.52
CPSF4-204ENST00000436336 SUSD3Q96L08 255 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 TWNKQ96RR1 684 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 ELOVL4Q9GZR5 314 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 SNX25Q9H3E2 840 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 CWH43Q9H720 699 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 SPTLC3Q9NUV7 552 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 HCSTQ9UBK5 93 aa24.53■■□□□ 1.52
CPSF4-204ENST00000436336 IPO7O95373 1038 aaKnown RBP24.52■■□□□ 1.52
CPSF4-204ENST00000436336 GALTP07902 379 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 SLC11A1P49279 550 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 OLIG1Q8TAK6 271 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 DNAI2Q9GZS0 605 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 MTIF3Q9H2K0 278 aaKnown RBP24.52■■□□□ 1.52
CPSF4-204ENST00000436336 CXXC1Q9P0U4 656 aaPredicted RBP24.52■■□□□ 1.52
CPSF4-204ENST00000436336 DSEQ9UL01 958 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 A0A087X0T9 212 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 F8W810 466 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 TRAPPC3O43617 180 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 TADA2AO75478 443 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 FAM228BP0C875 321 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 GNL1P36915 607 aaPredicted RBP24.52■■□□□ 1.52
CPSF4-204ENST00000436336 GFPT1Q06210 699 aaPredicted RBP24.52■■□□□ 1.52
CPSF4-204ENST00000436336 WSCD1Q658N2 575 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 GLYCTKQ8IVS8 523 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 SLC30A5Q8TAD4 765 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 LNX1Q8TBB1 728 aaPredicted RBP24.52■■□□□ 1.52
CPSF4-204ENST00000436336 SLC9A7Q96T83 725 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 DESI2Q9BSY9 194 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 ADAM28Q9UKQ2 775 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 STXBP5LQ9Y2K9 1186 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 ADGRG1Q9Y653 693 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 VWA8A3KMH1 1905 aa24.52■■□□□ 1.52
CPSF4-204ENST00000436336 A8MXQ7 604 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 DDX3XO00571 662 aaKnown RBP eCLIP24.51■■□□□ 1.511e-17■■□□□ 12.9
CPSF4-204ENST00000436336 GABRDO14764 452 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 THAP12O43422 761 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 GJB5O95377 273 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 CYP11A1P05108 521 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 CHRNB2P17787 502 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 LHX1P48742 406 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 BCAR1P56945 870 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 KRT83P78385 493 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 BTG3Q14201 252 aaPredicted RBP24.51■■□□□ 1.51
CPSF4-204ENST00000436336 SPA17Q15506 151 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 TAF3Q5VWG9 929 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 PHOSPHO2Q8TCD6 241 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 ZNF606Q8WXB4 792 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 YME1L1Q96TA2 773 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 PUF60Q9UHX1 559 aaKnown RBP24.51■■□□□ 1.51
CPSF4-204ENST00000436336 KIAA1257Q9ULG3 409 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 NME7Q9Y5B8 376 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 SLC4A7Q9Y6M7 1214 aa24.51■■□□□ 1.51
CPSF4-204ENST00000436336 I3L4J1 428 aa24.5■■□□□ 1.51
CPSF4-204ENST00000436336 CALCAP01258 141 aa24.5■■□□□ 1.51
CPSF4-204ENST00000436336 MMEP08473 750 aa24.5■■□□□ 1.51
CPSF4-204ENST00000436336 CCDC175P0C221 793 aa24.5■■□□□ 1.51
CPSF4-204ENST00000436336 FMO1Q01740 532 aa24.5■■□□□ 1.51
CPSF4-204ENST00000436336 OSTM1Q86WC4 334 aa24.5■■□□□ 1.51
CPSF4-204ENST00000436336 ACRBPQ8NEB7 543 aa24.5■■□□□ 1.51
CPSF4-204ENST00000436336 MARCH5Q9NX47 278 aa24.5■■□□□ 1.51
CPSF4-204ENST00000436336 PCDHB8Q9UN66 801 aa24.5■■□□□ 1.51
CPSF4-204ENST00000436336 CARNS1A5YM72 827 aa24.49■■□□□ 1.51
CPSF4-204ENST00000436336 ZNF263O14978 683 aa24.49■■□□□ 1.51
CPSF4-204ENST00000436336 VDRP11473 427 aa24.49■■□□□ 1.51
CPSF4-204ENST00000436336 TYMPP19971 482 aa24.49■■□□□ 1.51
CPSF4-204ENST00000436336 ALDH7A1P49419 539 aaKnown RBP24.49■■□□□ 1.51
CPSF4-204ENST00000436336 HTRA4P83105 476 aaPredicted RBP24.49■■□□□ 1.51
CPSF4-204ENST00000436336 ORC1Q13415 861 aa24.49■■□□□ 1.51
CPSF4-204ENST00000436336 METTL23Q86XA0 190 aa24.49■■□□□ 1.51
CPSF4-204ENST00000436336 SEPT11Q9NVA2 429 aaKnown RBP24.49■■□□□ 1.51
CPSF4-204ENST00000436336 NAGPAQ9UK23 515 aa24.49■■□□□ 1.51
CPSF4-204ENST00000436336 MED7O43513 233 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms