RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 BGNP21810 368 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 PRKCEQ02156 737 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 NFX1Q12986 1120 aaKnown RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 RBBP5Q15291 538 aaKnown RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 FNBP1LQ5T0N5 605 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 GPAT2Q6NUI2 795 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 RFX6Q8HWS3 928 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 PPM1NQ8N819 430 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 PYROXD1Q8WU10 500 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 UCMAQ8WVF2 138 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 TTC1Q99614 292 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 LPIN3Q9BQK8 851 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 TRIM6Q9C030 488 aaPredicted RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 ASCC2Q9H1I8 757 aaPredicted RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 UGT1A7Q9HAW7 530 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 UGT1A10Q9HAW8 530 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 UGT1A8Q9HAW9 530 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 AGO2Q9UKV8 859 aaKnown RBP9.13□□□□□ -0.95
USP40-203ENST00000427112 SLC12A4Q9UP95 1085 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 TMX2Q9Y320 296 aa9.13□□□□□ -0.95
USP40-203ENST00000427112 FAM47DPA6NHR8 397 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 SPDYE5A6NIY4 337 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 K7ERI5 159 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 USP1O94782 785 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 IVDP26440 423 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 HOXA10P31260 410 aaPredicted RBP9.12□□□□□ -0.95
USP40-203ENST00000427112 SPARCL1Q14515 664 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 AMHR2Q16671 573 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 MUM1Q2TAK8 710 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 PPP6R3Q5H9R7 873 aaPredicted RBP9.12□□□□□ -0.95
USP40-203ENST00000427112 DNAJC24Q6P3W2 148 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 DSTYKQ6XUX3 929 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 ARHGEF18Q6ZSZ5 1173 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 FBXO27Q8NI29 283 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 JOSD2Q8TAC2 188 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 DEPTORQ8TB45 409 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 RNF217Q8TC41 542 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 CKAP2Q8WWK9 683 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 CD101Q93033 1021 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 DDX27Q96GQ7 796 aaKnown RBP9.12□□□□□ -0.95
USP40-203ENST00000427112 RUNDC3BQ96NL0 473 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 TRAIPQ9BWF2 469 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 PLVAPQ9BX97 442 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 TBC1D10AQ9BXI6 508 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 STMN4Q9H169 189 aaPredicted RBP9.12□□□□□ -0.95
USP40-203ENST00000427112 R3HDMLQ9H3Y0 253 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 ZFP69BQ9UJL9 534 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 DLEC1Q9Y238 1755 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 ASAP2O43150 1006 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 DNAJC8O75937 253 aaPredicted RBP9.12□□□□□ -0.95
USP40-203ENST00000427112 KRT36O76013 467 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 STK10O94804 968 aaKnown RBP9.12□□□□□ -0.95
USP40-203ENST00000427112 ENO1P06733 434 aaKnown RBP9.12□□□□□ -0.95
USP40-203ENST00000427112 MAMLD1Q13495 774 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 ACTL9Q8TC94 416 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 TCP10LQ8TDR4 215 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 RSAD2Q8WXG1 361 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 MMP19Q99542 508 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 HAPLN2Q9GZV7 340 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 EHMT1Q9H9B1 1298 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 HEY2Q9UBP5 337 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 ABCA3Q99758 1704 aa9.12□□□□□ -0.95
USP40-203ENST00000427112 GRIN3BO60391 1043 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 ZMPSTE24O75844 475 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 SAT1P21673 171 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 PSMA2P25787 234 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 SERPINB3P29508 390 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 CETN2P41208 172 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 POLE2P56282 527 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 OTUD4Q01804 1114 aaKnown RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 STRN3Q13033 797 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 PGM5Q15124 567 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 PLEKHG4Q58EX7 1191 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 MFSD4BQ5TF39 518 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 LIN9Q5TKA1 542 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 ALYREFQ86V81 257 aaKnown RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 UNC5BQ8IZJ1 945 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 VPS52Q8N1B4 723 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 GPD1LQ8N335 351 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 POU5F2Q8N7G0 328 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 FBXO36Q8NEA4 188 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 DDX1Q92499 740 aaKnown RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 IFT74Q96LB3 600 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 CYP4F11Q9HBI6 524 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 TMEM8AQ9HCN3 771 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 AK5Q9Y6K8 562 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 FAM237BA0A1B0GVD1 139 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 SPDYE2BA6NHP3 402 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 CES2O00748 559 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 CDH16O75309 829 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 NR3C2P08235 984 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 SPDYE6P0CI01 402 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 ITIH2P19823 946 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 RFC1P35251 1148 aaPredicted RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 MSX2P35548 267 aaPredicted RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 CTCFP49711 727 aaPredicted RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 GTF2A2P52657 109 aa9.11□□□□□ -0.95
USP40-203ENST00000427112 GJC2Q5T442 439 aaPredicted RBP9.11□□□□□ -0.95
USP40-203ENST00000427112 CASC4Q6P4E1 433 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms