RNA–Protein interactions for RNA: ENST00000425876.6

CDK3-201, Transcript of cyclin dependent kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK3, Length 1,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK3-201ENST00000425876 RNF39Q9H2S5 420 aa15.33■□□□□ 0.05
CDK3-201ENST00000425876 HMX1Q9NP08 348 aaPredicted RBP15.33■□□□□ 0.05
CDK3-201ENST00000425876 PARP2Q9UGN5 583 aa15.33■□□□□ 0.05
CDK3-201ENST00000425876 TRIM17Q9Y577 477 aa15.33■□□□□ 0.05
CDK3-201ENST00000425876 SQORQ9Y6N5 450 aa15.33■□□□□ 0.05
CDK3-201ENST00000425876 SCINQ9Y6U3 715 aa15.33■□□□□ 0.05
CDK3-201ENST00000425876 PIRO00625 290 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 CALB1P05937 261 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 VDRP11473 427 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 RRM1P23921 792 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 GRK4P32298 578 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 THPOP40225 353 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 MESDQ14696 234 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 BRD3Q15059 726 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 TRIM71Q2Q1W2 868 aaKnown RBP15.32■□□□□ 0.04
CDK3-201ENST00000425876 LHX8Q68G74 356 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 CCDC70Q6NSX1 233 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 PASD1Q8IV76 773 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 UBL4BQ8N7F7 174 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 USP38Q8NB14 1042 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 RUBCNQ92622 972 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 CD101Q93033 1021 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 C18orf25Q96B23 403 aaPredicted RBP15.32■□□□□ 0.04
CDK3-201ENST00000425876 MS4A14Q96JA4 679 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 ZNF560Q96MR9 790 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 GLT1D1Q96MS3 346 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 APOL6Q9BWW8 343 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 ELOVL4Q9GZR5 314 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 ERVK-5Q9HDB9 667 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 TUBGCP4Q9UGJ1 667 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 LCMT1Q9UIC8 334 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 TRIP11Q15643 1979 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 PDCD11Q14690 1871 aaKnown RBP15.32■□□□□ 0.04
CDK3-201ENST00000425876 CCDC151A5D8V7 595 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 PGRMC1O00264 195 aaKnown RBP15.32■□□□□ 0.04
CDK3-201ENST00000425876 MYCNP04198 464 aaPredicted RBP15.32■□□□□ 0.04
CDK3-201ENST00000425876 CTSHP09668 335 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 CD19P15391 556 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 COMTP21964 271 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 MCM3P25205 808 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 CTNNA2P26232 953 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 SLC1A1P43005 524 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 DNA2P51530 1060 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 STILQ15468 1287 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 CNGA2Q16280 664 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 FBXO47Q5MNV8 452 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 WDR93Q6P2C0 686 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 MRPL10Q7Z7H8 261 aaKnown RBP15.32■□□□□ 0.04
CDK3-201ENST00000425876 TMEM130Q8N3G9 435 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 SLC43A3Q8NBI5 491 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 ABHD8Q96I13 439 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.32■□□□□ 0.048e-13■■■□□ 14.6
CDK3-201ENST00000425876 C11orf70Q9BRQ4 267 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 SEZ6LQ9BYH1 1024 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 EPC1Q9H2F5 836 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 FAM105AQ9NUU6 356 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 PARVAQ9NVD7 372 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 GDAP2Q9NXN4 497 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 TMEM59LQ9UK28 342 aa15.32■□□□□ 0.04
CDK3-201ENST00000425876 CCDC66A2RUB6 948 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 MYO1FO00160 1098 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 CEP104O60308 925 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 ZNF623O75123 536 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 LRPAP1P30533 357 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 C2orf54Q08AI8 447 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 NFX1Q12986 1120 aaKnown RBP15.31■□□□□ 0.04
CDK3-201ENST00000425876 MAMLD1Q13495 774 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 GLE1Q53GS7 698 aaKnown RBP15.31■□□□□ 0.04
CDK3-201ENST00000425876 GLRA4Q5JXX5 417 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 MMS22LQ6ZRQ5 1243 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 UNC93AQ86WB7 457 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 WDTC1Q8N5D0 677 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 ARRDC4Q8NCT1 418 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 TWNKQ96RR1 684 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 NAP1L3Q99457 506 aaPredicted RBP15.31■□□□□ 0.04
CDK3-201ENST00000425876 NT5C1AQ9BXI3 368 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 EHD2Q9NZN4 543 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 CHORDC1Q9UHD1 332 aaPredicted RBP15.31■□□□□ 0.04
CDK3-201ENST00000425876 ANAPC7Q9UJX3 599 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 NOD1Q9Y239 953 aa15.31■□□□□ 0.04
CDK3-201ENST00000425876 FAM170AA1A519 330 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 PPEF2O14830 753 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 FAM163BP0C2L3 166 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 RHOXF2BP0C7M4 288 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 ITGA4P13612 1032 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 CTNNA1P35221 906 aaKnown RBP15.3■□□□□ 0.04
CDK3-201ENST00000425876 PEX5P50542 639 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 RAB27AP51159 221 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 CLCN6P51797 869 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 NDST1P52848 882 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 GSCP56915 257 aaPredicted RBP15.3■□□□□ 0.04
CDK3-201ENST00000425876 TAP1Q03518 808 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 LIMS2Q7Z4I7 341 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 ERICH1Q86X53 443 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 C1orf131Q8NDD1 294 aaKnown RBP15.3■□□□□ 0.04
CDK3-201ENST00000425876 HNRNPLLQ8WVV9 542 aaKnown RBP15.3■□□□□ 0.04
CDK3-201ENST00000425876 PPP1R10Q96QC0 940 aaKnown RBP15.3■□□□□ 0.04
CDK3-201ENST00000425876 RHOXF2Q9BQY4 288 aa15.3■□□□□ 0.04
CDK3-201ENST00000425876 AGO3Q9H9G7 860 aaKnown RBP15.3■□□□□ 0.04
CDK3-201ENST00000425876 SLC38A7Q9NVC3 462 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms