RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 UBXN2BQ14CS0 331 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 R3HDM1Q15032 1099 aaKnown RBP5.61□□□□□ -1.51
VPS54-204ENST00000416400 C3orf38Q5JPI3 329 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 HIBCHQ6NVY1 386 aaPredicted RBP5.61□□□□□ -1.51
VPS54-204ENST00000416400 ZNF365Q70YC5 407 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 MED25Q71SY5 747 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 PDSS2Q86YH6 399 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 RNF152Q8N8N0 203 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 ANKRD42Q8N9B4 389 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 CPT1CQ8TCG5 803 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 BRI3BPQ8WY22 251 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 PPM1EQ8WY54 764 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 MAML1Q92585 1016 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 EXTL1Q92935 676 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 HERPUD2Q9BSE4 406 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 SERHLQ9NQF3 203 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 PCDHGB2Q9Y5G2 931 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 TRIM43BA6NCK2 446 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 ZNF785A8K8V0 405 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 TRIM24O15164 1050 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 FGF18O76093 207 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 ANXA1P04083 346 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 SLC6A4P31645 630 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 APOBEC3AP31941 199 aaPredicted RBP5.6□□□□□ -1.51
VPS54-204ENST00000416400 IL6STP40189 918 aaPredicted RBP5.6□□□□□ -1.51
VPS54-204ENST00000416400 HALP42357 657 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 TECP42680 631 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 PSMC1P62191 440 aaKnown RBP5.6□□□□□ -1.51
VPS54-204ENST00000416400 NHLH2Q02577 135 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 RAB32Q13637 225 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 RAPGEF1Q13905 1077 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 PDCD2Q16342 344 aaPredicted RBP5.6□□□□□ -1.51
VPS54-204ENST00000416400 RABL3Q5HYI8 236 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 KLHDC7AQ5VTJ3 777 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 LMBRD2Q68DH5 695 aaPredicted RBP5.6□□□□□ -1.51
VPS54-204ENST00000416400 RNF207Q6ZRF8 634 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 HTR3DQ70Z44 454 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 FITM2Q8N6M3 262 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 TRIM43Q96BQ3 446 aaPredicted RBP5.6□□□□□ -1.51
VPS54-204ENST00000416400 IQCDQ96DY2 449 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 PLEKHG4BQ96PX9 1271 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 SMURF2Q9HAU4 748 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 TRPM5Q9NZQ8 1165 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 ATP11BQ9Y2G3 1177 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 CEP83Q9Y592 693 aa5.6□□□□□ -1.51
VPS54-204ENST00000416400 A0A1W2PPC4 97 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 PRSS29PA6NIE9 313 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 DRGXA6NNA5 263 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 C1QTNF3-AMACRE9PGA6 284 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 UNC5CO95185 931 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 THP07101 528 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 HARSP12081 509 aaKnown RBP5.59□□□□□ -1.51
VPS54-204ENST00000416400 CHN2P52757 468 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 STARD3Q14849 445 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 ARL13BQ3SXY8 428 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 C1QL3Q5VWW1 255 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 MYRIPQ8NFW9 859 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 DDX17Q92841 729 aaKnown RBP5.59□□□□□ -1.51
VPS54-204ENST00000416400 ZNF341Q9BYN7 854 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 KRTAP3-1Q9BYR8 98 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 ZNF518BQ9C0D4 1074 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 GSTO2Q9H4Y5 243 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 FBXO34Q9NWN3 711 aa5.59□□□□□ -1.51
VPS54-204ENST00000416400 MAGED2Q9UNF1 606 aaPredicted RBP5.59□□□□□ -1.51
VPS54-204ENST00000416400 MORC2Q9Y6X9 1032 aaPredicted RBP5.59□□□□□ -1.51
VPS54-204ENST00000416400 PNPLA7Q6ZV29 1317 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 A0A087WV62 115 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 CCDC189A1A4V9 331 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 CDHR4A6H8M9 788 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 MBD3L4A6NDZ8 208 aaPredicted RBP5.58□□□□□ -1.52
VPS54-204ENST00000416400 MBD3L3A6NE82 208 aaPredicted RBP5.58□□□□□ -1.52
VPS54-204ENST00000416400 ADAMTS3O15072 1205 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 FAM20BO75063 409 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 PPFIA4O75335 1185 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 ITGB1P05556 798 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 HLA-DOAP06340 250 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 ANXA2P07355 339 aaKnown RBP5.58□□□□□ -1.52
VPS54-204ENST00000416400 GRPP07492 148 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 INSRRP14616 1297 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 TYRP1P17643 537 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 FGFR2P21802 821 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 BUD31P41223 144 aaPredicted RBP5.58□□□□□ -1.52
VPS54-204ENST00000416400 ZNF135P52742 658 aaPredicted RBP5.58□□□□□ -1.52
VPS54-204ENST00000416400 RNASE9P60153 205 aaKnown RBP5.58□□□□□ -1.52
VPS54-204ENST00000416400 POU6F2P78424 691 aaPredicted RBP5.58□□□□□ -1.52
VPS54-204ENST00000416400 CTBP1Q13363 440 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 CDSNQ15517 529 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 SLC35G1Q2M3R5 365 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 UTP14CQ5TAP6 766 aaKnown RBP5.58□□□□□ -1.52
VPS54-204ENST00000416400 TSHZ3Q63HK5 1081 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 FOXR2Q6PJQ5 311 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 SPRED1Q7Z699 444 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 MICU3Q86XE3 530 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 SYTL1Q8IYJ3 562 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 SYNE4Q8N205 404 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 MPP5Q8N3R9 675 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 ATP11CQ8NB49 1132 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 FANCBQ8NB91 859 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 IL17DQ8TAD2 202 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 SCAMP4Q969E2 229 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms