RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 LINC00271P0C7V0 271 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 CD58P19256 250 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 GNL1P36915 607 aaPredicted RBP15.21■□□□□ 0.03
SF3B1-204ENST00000414963 USP8P40818 1118 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 BRCC3P46736 316 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 LHX1P48742 406 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 NDST1P52848 882 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 PTK2Q05397 1052 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 ELAVL2Q12926 359 aaKnown RBP15.21■□□□□ 0.03
SF3B1-204ENST00000414963 SHHQ15465 462 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 ASTE1Q2TB18 679 aaPredicted RBP15.21■□□□□ 0.03
SF3B1-204ENST00000414963 C9orf50Q5SZB4 431 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 WSCD1Q658N2 575 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 KCNT2Q6UVM3 1135 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 CCDC170Q8IYT3 715 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 ADGRF2Q8IZF7 708 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 CRYBG2Q8N1P7 616 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 EPS8L1Q8TE68 723 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 CLP1Q92989 425 aaKnown RBP15.21■□□□□ 0.03
SF3B1-204ENST00000414963 ZNF558Q96NG5 402 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 ZBED2Q9BTP6 218 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 NT5C1AQ9BXI3 368 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 NOCTQ9UK39 431 aaKnown RBP15.21■□□□□ 0.03
SF3B1-204ENST00000414963 STXBP5LQ9Y2K9 1186 aa15.21■□□□□ 0.03
SF3B1-204ENST00000414963 SF3B1O75533 1304 aaKnown RBP eCLIP15.2■□□□□ 0.024e-7■■■■■ 31
SF3B1-204ENST00000414963 H0YGN5 161 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 OAZ2O95190 189 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 SKILP12757 684 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 CYP11B1P15538 503 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 BMP8BP34820 402 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 ARID5AQ03989 594 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 ZNF571Q7Z3V5 609 aaPredicted RBP15.2■□□□□ 0.02
SF3B1-204ENST00000414963 SLC47A2Q86VL8 602 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 ZNF677Q86XU0 584 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 RNF168Q8IYW5 571 aaPredicted RBP15.2■□□□□ 0.02
SF3B1-204ENST00000414963 SLC39A11Q8N1S5 342 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 FIBCD1Q8N539 461 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 COLGALT1Q8NBJ5 622 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 SLC4A11Q8NBS3 891 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 DDX1Q92499 740 aaKnown RBP15.2■□□□□ 0.02
SF3B1-204ENST00000414963 TMEM176AQ96HP8 235 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 IGSF21Q96ID5 467 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 RNPC3Q96LT9 517 aaKnown RBP15.2■□□□□ 0.02
SF3B1-204ENST00000414963 ELOVL4Q9GZR5 314 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 DNAI2Q9GZS0 605 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 SNX25Q9H3E2 840 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 HAUS4Q9H6D7 363 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 NHEJ1Q9H9Q4 299 aaPredicted RBP15.2■□□□□ 0.02
SF3B1-204ENST00000414963 AAASQ9NRG9 546 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 NME7Q9Y5B8 376 aa15.2■□□□□ 0.02
SF3B1-204ENST00000414963 I3L4J1 428 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 ARHGAP6O43182 974 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 TLL1O43897 1013 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 FGFR3P22607 806 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 EIF4A3P38919 411 aaKnown RBP15.19■□□□□ 0.02
SF3B1-204ENST00000414963 CDR2Q01850 454 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 MRPL58Q14197 206 aaKnown RBP15.19■□□□□ 0.02
SF3B1-204ENST00000414963 FUT10Q6P4F1 479 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 NOP9Q86U38 636 aaKnown RBP15.19■□□□□ 0.02
SF3B1-204ENST00000414963 OSTM1Q86WC4 334 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 TMEM173Q86WV6 379 aaPredicted RBP15.19■□□□□ 0.02
SF3B1-204ENST00000414963 METTL23Q86XA0 190 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 OR6B3Q8NGW1 331 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 SLC30A5Q8TAD4 765 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 OLIG1Q8TAK6 271 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 HASPINQ8TF76 798 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 BCL7CQ8WUZ0 217 aaPredicted RBP15.19■□□□□ 0.02
SF3B1-204ENST00000414963 ZNF830Q96NB3 372 aaPredicted RBP15.19■□□□□ 0.02
SF3B1-204ENST00000414963 TWNKQ96RR1 684 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 AGPAT1Q99943 283 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 GPR62Q9BZJ7 368 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 SPG21Q9NZD8 308 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 STK39Q9UEW8 545 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 HMGXB4Q9UGU5 601 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 PTPRSQ13332 1948 aa15.19■□□□□ 0.02
SF3B1-204ENST00000414963 A8MXQ7 604 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 LCA5LO95447 670 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 PLEKP08567 350 aaPredicted RBP15.18■□□□□ 0.02
SF3B1-204ENST00000414963 VDRP11473 427 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 CHRNB2P17787 502 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 LMO2P25791 158 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 GNA15P30679 374 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 PPM1AP35813 382 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 PDE6CP51160 858 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 BMS1Q14692 1282 aaKnown RBP15.18■□□□□ 0.02
SF3B1-204ENST00000414963 TDRD12Q587J7 1177 aaKnown RBP15.18■□□□□ 0.02
SF3B1-204ENST00000414963 SPOUT1Q5T280 376 aaKnown RBP15.18■□□□□ 0.02
SF3B1-204ENST00000414963 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.18■□□□□ 0.02
SF3B1-204ENST00000414963 VPS36Q86VN1 386 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 ZNF606Q8WXB4 792 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 TNIP3Q96KP6 325 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 CCDC42Q96M95 316 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 RTP3Q9BQQ7 232 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 ACBD6Q9BR61 282 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 UBE2OQ9C0C9 1292 aaKnown RBP15.18■□□□□ 0.02
SF3B1-204ENST00000414963 ACP6Q9NPH0 428 aa15.18■□□□□ 0.02
SF3B1-204ENST00000414963 EPN1Q9Y6I3 576 aaPredicted RBP15.18■□□□□ 0.02
SF3B1-204ENST00000414963 SOWAHDA6NJG2 315 aa15.17■□□□□ 0.02
SF3B1-204ENST00000414963 EIF3CLB5ME19 914 aaKnown RBP15.17■□□□□ 0.02
SF3B1-204ENST00000414963 NT5C1B-RDH14C9J2C7 533 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms