RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 NAA16Q6N069 864 aaPredicted RBP7.48□□□□□ -1.21
USP40-202ENST00000409945 LILRA6Q6PI73 481 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 GLB1L3Q8NCI6 653 aaPredicted RBP7.48□□□□□ -1.21
USP40-202ENST00000409945 TAAR9Q96RI9 348 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 HMG20BQ9P0W2 317 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 SCAF8Q9UPN6 1271 aaKnown RBP7.48□□□□□ -1.21
USP40-202ENST00000409945 SEC24DO94855 1032 aaPredicted RBP7.48□□□□□ -1.21
USP40-202ENST00000409945 BCAR1P56945 870 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 MAP3K12Q12852 859 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 SPIDRQ14159 915 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 ACAP1Q15027 740 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 UAP1L1Q3KQV9 507 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 WDR72Q3MJ13 1102 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 GRAMD4Q6IC98 578 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 LARP4Q71RC2 724 aaKnown RBP eCLIP7.48□□□□□ -1.21
USP40-202ENST00000409945 OTOP2Q7RTS6 562 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 CDYL2Q8N8U2 506 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 FAM151AQ8WW52 585 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 KCNN1Q92952 543 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 CLIP3Q96DZ5 547 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 CLIC6Q96NY7 704 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 SPATA25Q9BR10 227 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 ACE2Q9BYF1 805 aaPredicted RBP7.48□□□□□ -1.21
USP40-202ENST00000409945 LRRCC1Q9C099 1032 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 NGRNQ9NPE2 291 aaKnown RBP7.48□□□□□ -1.21
USP40-202ENST00000409945 OBP2AQ9NY56 170 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 IPPQ9Y573 584 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 MROH7-TTC4A0A0A0MT08 1334 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 MANSC4A6NHS7 340 aaPredicted RBP7.47□□□□□ -1.21
USP40-202ENST00000409945 ENTPD3O75355 529 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 PI3P19957 117 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 MECOMQ03112 1051 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 MALLQ13021 153 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 VWA3BQ502W6 1294 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 APOBEC3HQ6NTF7 200 aaKnown RBP7.47□□□□□ -1.21
USP40-202ENST00000409945 DLK2Q6UY11 383 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 RASAL3Q86YV0 1011 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 DYDC2Q96IM9 177 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 RAX2Q96IS3 184 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 ZNF341Q9BYN7 854 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 SAGE1Q9NXZ1 904 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 PNMA8BQ9ULN7 279 aaPredicted RBP7.47□□□□□ -1.21
USP40-202ENST00000409945 PCDHAC2Q9Y5I4 1007 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 RPAP1Q9BWH6 1393 aaPredicted RBP7.47□□□□□ -1.21
USP40-202ENST00000409945 AK9Q5TCS8 1911 aa7.47□□□□□ -1.21
USP40-202ENST00000409945 PRC1O43663 620 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 SEMA7AO75326 666 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 POU2F2P09086 479 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 MCAMP43121 646 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 BTDP43251 543 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 KCNQ1P51787 676 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 SEPT2Q15019 361 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 CXorf57Q6NSI4 855 aaKnown RBP7.46□□□□□ -1.21
USP40-202ENST00000409945 CDC42EP5Q6NZY7 148 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 FBXO15Q8NCQ5 510 aaPredicted RBP7.46□□□□□ -1.21
USP40-202ENST00000409945 PPP1R35Q8TAP8 253 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 SLC35G2Q8TBE7 412 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 NRG4Q8WWG1 115 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 NKD2Q969F2 451 aaPredicted RBP7.46□□□□□ -1.21
USP40-202ENST00000409945 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.46□□□□□ -1.21
USP40-202ENST00000409945 TMEM39BQ9GZU3 492 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 KIAA1683Q9H0B3 1180 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 IL1RAPL2Q9NP60 686 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 DBNLQ9UJU6 430 aaKnown RBP7.46□□□□□ -1.21
USP40-202ENST00000409945 INTUQ9ULD6 942 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 PMF1-BGLAPU3KQ54 211 aa7.46□□□□□ -1.21
USP40-202ENST00000409945 FOXN1O15353 648 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 HTRA2O43464 458 aaPredicted RBP7.46□□□□□ -1.22
USP40-202ENST00000409945 IDH1O75874 414 aaKnown RBP7.46□□□□□ -1.22
USP40-202ENST00000409945 ZNF28P17035 718 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 CACNB3P54284 484 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 MGAT5Q09328 741 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 TCP10Q12799 353 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 IFIT1BQ5T764 474 aaKnown RBP7.46□□□□□ -1.22
USP40-202ENST00000409945 C20orf194Q5TEA3 1177 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 TMEM200BQ69YZ2 307 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 ZSCAN25Q6NSZ9 544 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 ABHD15Q6UXT9 468 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 BMP8AQ7Z5Y6 402 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 MSL3Q8N5Y2 521 aaKnown RBP7.46□□□□□ -1.22
USP40-202ENST00000409945 NSUN4Q96CB9 384 aaKnown RBP7.46□□□□□ -1.22
USP40-202ENST00000409945 ACO2Q99798 780 aaKnown RBP7.46□□□□□ -1.22
USP40-202ENST00000409945 IDI2Q9BXS1 227 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 WNT8AQ9H1J5 351 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 DNM3Q9UQ16 869 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 MYH2Q9UKX2 1941 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 GAKO14976 1311 aa7.46□□□□□ -1.22
USP40-202ENST00000409945 THSD7BQ9C0I4 1608 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 PCNTO95613 3336 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 GPR75-ASB3A0A0A6YYF3 556 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 CCDC154A6NI56 674 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 DDX3XO00571 662 aaKnown RBP eCLIP7.45□□□□□ -1.22
USP40-202ENST00000409945 CYP2C19P33261 490 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 LBX1P52954 281 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 ADKP55263 362 aaKnown RBP7.45□□□□□ -1.22
USP40-202ENST00000409945 PICALMQ13492 652 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 IL10RAQ13651 578 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 VMACQ2NL98 169 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 TRMT10BQ6PF06 316 aaKnown RBP7.45□□□□□ -1.22
USP40-202ENST00000409945 Q6ZVL8 140 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms