RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 ZBED3Q96IU2 234 aaPredicted RBP13.67□□□□□ -0.22
PTPRN-202ENST00000409251 NDNQ99608 321 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 HSD17B14Q9BPX1 270 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 ZSWIM1Q9BR11 485 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 PACSIN3Q9UKS6 424 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 CYP3A7-CYP3A51PA0A087WV96 503 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 A6NHS1 94 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 KRT4P19013 534 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 CYP3A7P24462 503 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 SERPINB3P29508 390 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 HOXD13P35453 343 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 PGM1P36871 562 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 WDR4P57081 412 aaKnown RBP13.67□□□□□ -0.22
PTPRN-202ENST00000409251 MTFR1Q15390 333 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 ZCWPW2Q504Y3 356 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 GALNT15Q8N3T1 639 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 PDCD2LQ9BRP1 358 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 NINJ2Q9NZG7 142 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 ZNF711Q9Y462 761 aa13.67□□□□□ -0.22
PTPRN-202ENST00000409251 TRPA1O75762 1119 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 DCTN3O75935 186 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 GJB6O95452 261 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 SGPL1O95470 568 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 TTC4O95801 387 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 ETS1P14921 441 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 ADRA1DP25100 572 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 FASTKD3Q14CZ7 662 aaKnown RBP13.66□□□□□ -0.22
PTPRN-202ENST00000409251 EPHA7Q15375 998 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 P3H1Q32P28 736 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 SEZ6Q53EL9 994 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 LRRC74BQ6ZQY2 392 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 DDX27Q96GQ7 796 aaKnown RBP13.66□□□□□ -0.22
PTPRN-202ENST00000409251 NAP1L4Q99733 375 aaKnown RBP13.66□□□□□ -0.22
PTPRN-202ENST00000409251 PREBQ9HCU5 417 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 PPARGC1AQ9UBK2 798 aaKnown RBP13.66□□□□□ -0.22
PTPRN-202ENST00000409251 SEPT9Q9UHD8 586 aaPredicted RBP13.66□□□□□ -0.22
PTPRN-202ENST00000409251 A6NJR5 290 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 TBC1D12O60347 775 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 CDH16O75309 829 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 EYA4O95677 639 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 TMEM253P0C7T8 217 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 MAPK4P31152 587 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 SERPINB6P35237 376 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 PSMC2P35998 433 aaKnown RBP13.66□□□□□ -0.22
PTPRN-202ENST00000409251 GPC5P78333 572 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 LRRC6Q86X45 466 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 RASGEF1CQ8N431 466 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 WDR60Q8WVS4 1066 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 ERLEC1Q96DZ1 483 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 CEP170P1Q96L14 293 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 AGPAT1Q99943 283 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 KCTD10Q9H3F6 313 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 LMCD1Q9NZU5 365 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 TBX10O75333 385 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 CCNE2O96020 404 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 FMO5P49326 533 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 ACSBG2Q5FVE4 666 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 C1orf146Q5VVC0 180 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 CTAGE3PQ8IX95 158 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 RFWD2Q8NHY2 731 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 USP6NLQ92738 828 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 DCLRE1BQ9H816 532 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 GALNT8Q9NY28 637 aa13.66□□□□□ -0.22
PTPRN-202ENST00000409251 SIPA1L1O43166 1804 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 MEI4A8MW99 385 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 DNAJC6O75061 913 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 KRT10P13645 584 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 RRM1P23921 792 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 KIF22Q14807 665 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 GRAMD1BQ3KR37 738 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 TMEM63BQ5T3F8 832 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 GJC2Q5T442 439 aaPredicted RBP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 RGS9BPQ6ZS82 235 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 CROCCP2Q86T23 111 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 SPATA24Q86W54 205 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 CDR2LQ86X02 465 aaPredicted RBP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 BICD1Q96G01 975 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 RBM41Q96IZ5 413 aaKnown RBP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 MAGEB18Q96M61 343 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 NACC1Q96RE7 527 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 CBWD1Q9BRT8 395 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 IQCGQ9H095 443 aaKnown RBP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 ARL8BQ9NVJ2 186 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 WDR35Q9P2L0 1181 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 R3HDM2Q9Y2K5 976 aaKnown RBP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 EMSYQ7Z589 1322 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 B2RBV5 119 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 HNRNPCP07910 306 aaKnown RBP eCLIP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 CYP2C8P10632 490 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 RPS12P25398 132 aaKnown RBP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 YWHABP31946 246 aaKnown RBP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 DLG4P78352 724 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 POU5F1Q01860 360 aaKnown RBP13.65□□□□□ -0.22
PTPRN-202ENST00000409251 CETN1Q12798 172 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 SLC1A5Q15758 541 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 C6orf163Q5TEZ5 329 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 FKBP1CQ5VVH2 108 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 MCF2L2Q86YR7 1114 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 FAM81AQ8TBF8 368 aa13.65□□□□□ -0.22
PTPRN-202ENST00000409251 ASAP3Q8TDY4 903 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms