RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 USP10Q14694 798 aaKnown RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 DOK7Q18PE1 504 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TTC30AQ86WT1 665 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TTC30BQ8N4P2 665 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 ZNF557Q8N988 423 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 CHST13Q8NET6 341 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TMC2Q8TDI7 906 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 ATXN2LQ8WWM7 1075 aaKnown RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 RMND5BQ96G75 393 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 CRAMP1Q96RY5 1269 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 NIF3L1Q9GZT8 377 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 GEMIN8Q9NWZ8 242 aaKnown RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 HSPBP1Q9NZL4 362 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 MBD2Q9UBB5 411 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 H3BMM5 538 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SLC16A4O15374 487 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 CNOT3O75175 753 aaKnown RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 LARGE1O95461 756 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 PRKCBP05771 671 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 WEE2P0C1S8 567 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 GPD1P21695 349 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 RRM2P31350 389 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TGM3Q08188 693 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SF3A3Q12874 501 aaKnown RBP eCLIP6.36□□□□□ -1.392e-17■■■■■ 37.8
SCN1A-203ENST00000409050 BFSP2Q13515 415 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TJAP1Q5JTD0 557 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TMEM154Q6P9G4 183 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SCARA5Q6ZMJ2 495 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TBC1D10CQ8IV04 446 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 GLYCTKQ8IVS8 523 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SIRT2Q8IXJ6 389 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SHCBP1Q8NEM2 672 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SLC35G2Q8TBE7 412 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 RNF217Q8TC41 542 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SLC20A1Q8WUM9 679 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 GPRASP2Q96D09 838 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 CAMKK2Q96RR4 588 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 DNAJC7Q99615 494 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 ARMC7Q9H6L4 198 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 BCS1LQ9Y276 419 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 PRG3Q9Y2Y8 225 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 MAP3K4Q9Y6R4 1608 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 NEXMIFQ5QGS0 1516 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 BMP10O95393 424 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 EGFRP00533 1210 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 RPA1P27694 616 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SLC16A2P36021 539 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 COILP38432 576 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 CDK7P50613 346 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 ST8SIA6P61647 398 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TRIP10Q15642 601 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 PTPROQ16827 1216 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 QRICH1Q2TAL8 776 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TRIM16LQ309B1 348 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SYTL3Q4VX76 610 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TWF2Q6IBS0 349 aaKnown RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TAF2Q6P1X5 1199 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 HHIPL2Q6UWX4 724 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 NYAP1Q6ZVC0 841 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 KRT73Q86Y46 540 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 CYP4Z2PQ8N1L4 340 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 C2orf69Q8N8R5 385 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 FAM162AQ96A26 154 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 TMEM237Q96Q45 408 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 MCCC1Q96RQ3 725 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 PRMT1Q99873 361 aaKnown RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 HEMGNQ9BXL5 484 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 EMILIN2Q9BXX0 1053 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 ADNPQ9H2P0 1102 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 CYP3A43Q9HB55 503 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 CD209Q9NNX6 404 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SAR1AQ9NR31 198 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 NDFIP2Q9NV92 336 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 XPO7Q9UIA9 1087 aaKnown RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 G3BP2Q9UN86 482 aaKnown RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 PLAGL2Q9UPG8 496 aa6.36□□□□□ -1.39
SCN1A-203ENST00000409050 RNF17Q9BXT8 1623 aaKnown RBP6.36□□□□□ -1.39
SCN1A-203ENST00000409050 SPDYE5A6NIY4 337 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 VWA5AO00534 786 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 TRIM24O15164 1050 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 PRKAB2O43741 272 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 FCER1AP12319 257 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 SLC9A1P19634 815 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 ATXN3P54252 364 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-203ENST00000409050 ADCY1Q08828 1119 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 KCNA1Q09470 495 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 ACAP1Q15027 740 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 TAB1Q15750 504 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 TIMM50Q3ZCQ8 353 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 SPDYE7PQ495Y7 208 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 TMEM259Q4ZIN3 620 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 C12orf60Q5U649 245 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 PAPD7Q5XG87 772 aaKnown RBP6.35□□□□□ -1.39
SCN1A-203ENST00000409050 TTC33Q6PID6 262 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-203ENST00000409050 FEZF2Q8TBJ5 459 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 EXT2Q93063 718 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 ABHD8Q96I13 439 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 VCPIP1Q96JH7 1222 aa6.35□□□□□ -1.39
SCN1A-203ENST00000409050 TBCBQ99426 244 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms