RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 CCDC51Q96ER9 411 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 EHD2Q9NZN4 543 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 CXXC1Q9P0U4 656 aaPredicted RBP12.48□□□□□ -0.41
SKA3-203ENST00000400018 TBX21Q9UL17 535 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 KIF4AO95239 1232 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 RAG1P15918 1043 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 RGS7P49802 495 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 GALCP54803 685 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 RNASE9P60153 205 aaKnown RBP12.48□□□□□ -0.41
SKA3-203ENST00000400018 TNNC1P63316 161 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 RBP5P82980 135 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 NAA30Q147X3 362 aaPredicted RBP12.48□□□□□ -0.41
SKA3-203ENST00000400018 SLC18A3Q16572 532 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 TIGD5Q53EQ6 642 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 ANKRD33Q7Z3H0 272 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 RPAINQ86UA6 219 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 ZNF598Q86UK7 904 aaKnown RBP12.48□□□□□ -0.41
SKA3-203ENST00000400018 C1orf131Q8NDD1 294 aaKnown RBP12.48□□□□□ -0.41
SKA3-203ENST00000400018 HEXIM2Q96MH2 286 aaKnown RBP12.48□□□□□ -0.41
SKA3-203ENST00000400018 HINFPQ9BQA5 517 aa12.48□□□□□ -0.41
SKA3-203ENST00000400018 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.48□□□□□ -0.41
SKA3-203ENST00000400018 V9GYY5 206 aaPredicted RBP12.48□□□□□ -0.41
SKA3-203ENST00000400018 ZBBXA8MT70 800 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 KPNA7A9QM74 516 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 PODXLO00592 558 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 FTCDO95954 541 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 FTLP02792 175 aaPredicted RBP12.47□□□□□ -0.41
SKA3-203ENST00000400018 ADORA2BP29275 332 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 CYLC1P35663 651 aaPredicted RBP12.47□□□□□ -0.41
SKA3-203ENST00000400018 RAD23BP54727 409 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 BFSP2Q13515 415 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 SPA17Q15506 151 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 DENND1BQ6P3S1 775 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 C16orf59Q7L2K0 433 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 NECAB2Q7Z6G3 386 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 CEP57Q86XR8 500 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 ZNF606Q8WXB4 792 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 BADQ92934 168 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 C11orf70Q9BRQ4 267 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 SYT11Q9BT88 431 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 RGS18Q9NS28 235 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 C2CD2Q9Y426 696 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 TBKBP1A7MCY6 615 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 TLR3O15455 904 aaKnown RBP12.47□□□□□ -0.41
SKA3-203ENST00000400018 NRDCO43847 1150 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 FERP16591 822 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 PDE6CP51160 858 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 SLC24A5Q71RS6 500 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 SLC4A11Q8NBS3 891 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 CAGE1Q8TC20 777 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 KBTBD7Q8WVZ9 684 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 PIWIL1Q96J94 861 aaKnown RBP12.47□□□□□ -0.41
SKA3-203ENST00000400018 TBC1D13Q9NVG8 400 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 UBQLN1Q9UMX0 589 aaKnown RBP12.47□□□□□ -0.41
SKA3-203ENST00000400018 COG5Q9UP83 839 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 TRANK1O15050 2925 aa12.47□□□□□ -0.41
SKA3-203ENST00000400018 EIF3CLB5ME19 914 aaKnown RBP12.46□□□□□ -0.41
SKA3-203ENST00000400018 PIRO00625 290 aa12.46□□□□□ -0.41
SKA3-203ENST00000400018 GRAP2O75791 330 aa12.46□□□□□ -0.41
SKA3-203ENST00000400018 NOP2P46087 812 aaKnown RBP12.46□□□□□ -0.41
SKA3-203ENST00000400018 GCNT1Q02742 428 aa12.46□□□□□ -0.41
SKA3-203ENST00000400018 PTPN11Q06124 597 aaPredicted RBP12.46□□□□□ -0.41
SKA3-203ENST00000400018 PPP1R26Q5T8A7 1209 aaPredicted RBP12.46□□□□□ -0.41
SKA3-203ENST00000400018 CD300LGQ6UXG3 332 aa12.46□□□□□ -0.41
SKA3-203ENST00000400018 TAS1R1Q7RTX1 841 aa12.46□□□□□ -0.41
SKA3-203ENST00000400018 EIF3CQ99613 913 aaKnown RBP12.46□□□□□ -0.41
SKA3-203ENST00000400018 CYB561D2O14569 222 aa12.46□□□□□ -0.41
SKA3-203ENST00000400018 MRPS25P82663 173 aaKnown RBP12.46□□□□□ -0.41
SKA3-203ENST00000400018 NYAP1Q6ZVC0 841 aa12.46□□□□□ -0.41
SKA3-203ENST00000400018 WDTC1Q8N5D0 677 aa12.46□□□□□ -0.41
SKA3-203ENST00000400018 BCL7CQ8WUZ0 217 aaPredicted RBP12.46□□□□□ -0.41
SKA3-203ENST00000400018 ST7Q9NRC1 585 aa12.46□□□□□ -0.41
SKA3-203ENST00000400018 ANO9A1A5B4 782 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 CCDC85CA6NKD9 419 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 A8MXQ7 604 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 C2CD2LO14523 706 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 ZNF185O15231 689 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 BEST1O76090 585 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 CACNA2D1P54289 1103 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 RAB6CQ53S08 254 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 MMS22LQ6ZRQ5 1243 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 SENP8Q96LD8 212 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 RAB6CQ9H0N0 254 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 PLEKHA4Q9H4M7 779 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 TMEM30AQ9NV96 361 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 ITGA11Q9UKX5 1188 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 MTUS1Q9ULD2 1270 aa12.46□□□□□ -0.42
SKA3-203ENST00000400018 MRPL42Q9Y6G3 142 aaKnown RBP12.46□□□□□ -0.42
SKA3-203ENST00000400018 TDRD15B5MCY1 1934 aaKnown RBP12.45□□□□□ -0.42
SKA3-203ENST00000400018 CCDC66A2RUB6 948 aa12.45□□□□□ -0.42
SKA3-203ENST00000400018 GRXCR1A8MXD5 290 aa12.45□□□□□ -0.42
SKA3-203ENST00000400018 KCNE1P15382 129 aa12.45□□□□□ -0.42
SKA3-203ENST00000400018 TKTP29401 623 aaKnown RBP12.45□□□□□ -0.42
SKA3-203ENST00000400018 PRKCIP41743 596 aa12.45□□□□□ -0.42
SKA3-203ENST00000400018 ARPP19P56211 112 aa12.45□□□□□ -0.42
SKA3-203ENST00000400018 UPP1Q16831 310 aa12.45□□□□□ -0.42
SKA3-203ENST00000400018 UBR7Q8N806 425 aa12.45□□□□□ -0.42
SKA3-203ENST00000400018 AUTS2Q8WXX7 1259 aa12.45□□□□□ -0.42
SKA3-203ENST00000400018 PGLYRP2Q96PD5 576 aa12.45□□□□□ -0.42
SKA3-203ENST00000400018 B3GNT5Q9BYG0 378 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms