RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 KPNA7A9QM74 516 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 ARP10275 920 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 CCND1P24385 295 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 STAT5BP51692 787 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 YWHAHQ04917 246 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 STX3Q13277 289 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 ARL13BQ3SXY8 428 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 APTXQ7Z2E3 356 aaKnown RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 SLC5A4Q9NY91 659 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 HOXC10Q9NYD6 342 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 DDX20Q9UHI6 824 aaKnown RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 LRRC10BA6NIK2 292 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 FANCGO15287 622 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 NVLO15381 856 aaKnown RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 MOCS2O96007 188 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 BRD2P25440 801 aaKnown RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 ZNF200P98182 395 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 ORC1Q13415 861 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 MROH9Q5TGP6 573 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 ANO5Q75V66 913 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 NDUFAF2Q8N183 169 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 LRRC15Q8TF66 581 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 SNX9Q9Y5X1 595 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 ENO3P13929 434 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 TCN1P20061 433 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 OSBPP22059 807 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 SMARCA1P28370 1054 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 KPNA2P52292 529 aaKnown RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 CCNA1P78396 465 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 TRIP10Q15642 601 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 SCN4BQ8IWT1 228 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 SLC5A5Q92911 643 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 KIF12Q96FN5 646 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 FAM111AQ96PZ2 611 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 TOPORSQ9NS56 1045 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 F8VZ95 297 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 PFDN6O15212 129 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 HUS1O60921 280 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 KCNA3P22001 575 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 PHKA2P46019 1235 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 NLRP11P59045 1033 aaKnown RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 TWF2Q6IBS0 349 aaKnown RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 KLC3Q6P597 504 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 WDR59Q6PJI9 974 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 C1orf131Q8NDD1 294 aaKnown RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 ICA1LQ8NDH6 482 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 TAS1R2Q8TE23 839 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 MXRA8Q9BRK3 442 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 TMEM8AQ9HCN3 771 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 BLOC1S4Q9NUP1 217 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 FAM49BQ9NUQ9 324 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 ZBTB39O15060 712 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 GSTA4O15217 222 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 PRKCBP05771 671 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 PDGFRBP09619 1106 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 RARGP13631 454 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 XKR3Q5GH77 459 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 SLC47A2Q86VL8 602 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 LRRC71Q8N4P6 559 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 UBA3Q8TBC4 463 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 ACTRT1Q8TDG2 376 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 CLMNQ96JQ2 1002 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 FSD1LQ9BXM9 530 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 TMEM39BQ9GZU3 492 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 ACAD9Q9H845 621 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 USP20Q9Y2K6 914 aa11.29□□□□□ -0.6
CCDC40-204ENST00000397545 TNRC6CQ9HCJ0 1690 aaKnown RBP11.29□□□□□ -0.6
CCDC40-204ENST00000397545 SPDYE2BA6NHP3 402 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 AIM2O14862 343 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 SEC24DO94855 1032 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 SPDYE6P0CI01 402 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 ZNF844Q08AG5 666 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 KCNA1Q09470 495 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 COBLL1Q53SF7 1204 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 ZBTB41Q5SVQ8 909 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 C15orf52Q6ZUT6 534 aaKnown RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 SYDE1Q6ZW31 735 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 METTL23Q86XA0 190 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 TEX2Q8IWB9 1127 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 BBS5Q8N3I7 341 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 AENQ8WTP8 325 aaKnown RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 PDCD6IPQ8WUM4 868 aaKnown RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 CAVIN3Q969G5 261 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 UNC45AQ9H3U1 944 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 VCPKMTQ9H867 229 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 HEY2Q9UBP5 337 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 PHTF1Q9UMS5 762 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 TRAF3IP3Q9Y228 551 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 COL5A3P25940 1745 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 SNED1Q8TER0 1413 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 TRIM49D1C9J1S8 452 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 EIF3DO15371 548 aaKnown RBP eCLIP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 HSPA8P11142 646 aaKnown RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 NQO1P15559 274 aaKnown RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 HOXA10P31260 410 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 RANBP1P43487 201 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 SERPINB4P48594 390 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 NSUN2Q08J23 767 aaKnown RBP eCLIP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 FEZF2Q8TBJ5 459 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 ALKBH8Q96BT7 664 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms