RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 KIF12Q96FN5 646 aa11.2□□□□□ -0.62
NEDD8-202ENST00000396828 ZNF512Q96ME7 567 aaPredicted RBP11.2□□□□□ -0.62
NEDD8-202ENST00000396828 LRRC3BQ96PB8 259 aa11.2□□□□□ -0.62
NEDD8-202ENST00000396828 FIZ1Q96SL8 496 aa11.2□□□□□ -0.62
NEDD8-202ENST00000396828 TIPINQ9BVW5 301 aa11.2□□□□□ -0.62
NEDD8-202ENST00000396828 BRD9Q9H8M2 597 aa11.2□□□□□ -0.62
NEDD8-202ENST00000396828 ZNF334Q9HCZ1 680 aaPredicted RBP11.2□□□□□ -0.62
NEDD8-202ENST00000396828 BLOC1S4Q9NUP1 217 aa11.2□□□□□ -0.62
NEDD8-202ENST00000396828 AFF4Q9UHB7 1163 aaKnown RBP11.2□□□□□ -0.62
NEDD8-202ENST00000396828 NDRG2Q9UN36 371 aaKnown RBP11.2□□□□□ -0.62
NEDD8-202ENST00000396828 SLC27A5Q9Y2P5 690 aa11.2□□□□□ -0.62
NEDD8-202ENST00000396828 A0A1W2PRU2 124 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 MED19A0JLT2 244 aaPredicted RBP11.19□□□□□ -0.62
NEDD8-202ENST00000396828 ARNTLO00327 626 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 MICAL2O94851 1124 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 CLTAP09496 248 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 CCDC192P0DO97 292 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 TDGF1P13385 188 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 NMT1P30419 496 aaKnown RBP11.19□□□□□ -0.62
NEDD8-202ENST00000396828 GDI1P31150 447 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 HOXC13P31276 330 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 SMTNP53814 917 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 ZNF445P59923 1031 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 YWHAHQ04917 246 aaPredicted RBP11.19□□□□□ -0.62
NEDD8-202ENST00000396828 DUSP4Q13115 394 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 PNOCQ13519 176 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 MCM6Q14566 821 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 ZNF528Q3MIS6 628 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 CYP4A22Q5TCH4 519 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 ZC3H14Q6PJT7 736 aaKnown RBP11.19□□□□□ -0.62
NEDD8-202ENST00000396828 ZNF852Q6ZMS4 543 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 ZBTB44Q8NCP5 570 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 APPL2Q8NEU8 664 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 SHKBP1Q8TBC3 707 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 RUBCNQ92622 972 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 SMARCD2Q92925 531 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 SMARCE1Q969G3 411 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 CCDC47Q96A33 483 aaKnown RBP11.19□□□□□ -0.62
NEDD8-202ENST00000396828 BICD1Q96G01 975 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 HINFPQ9BQA5 517 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 MKNK1Q9BUB5 465 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 TRMT61BQ9BVS5 477 aaKnown RBP11.19□□□□□ -0.62
NEDD8-202ENST00000396828 ZFP14Q9HCL3 533 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 KBTBD4Q9NVX7 518 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 KIAA1468Q9P260 1216 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 FBXO4Q9UKT5 387 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 TBX20Q9UMR3 447 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 YIPF1Q9Y548 306 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 TSC2P49815 1807 aa11.19□□□□□ -0.62
NEDD8-202ENST00000396828 SCN1AP35498 2009 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 ANKRD63C9JTQ0 380 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 ZNF197O14709 1029 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 ADRB2P07550 413 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 NFICP08651 508 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 PSMC3P17980 439 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 CYP3A5P20815 502 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 ZNF131P52739 623 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 FOXK2Q01167 660 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 GAS6Q14393 721 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 ZC2HC1CQ53FD0 456 aaPredicted RBP11.18□□□□□ -0.62
NEDD8-202ENST00000396828 SCARA3Q6AZY7 606 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 JADE1Q6IE81 842 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 IQCEQ6IPM2 695 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 CENPPQ6IPU0 288 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 LRSAM1Q6UWE0 723 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 ERMP1Q7Z2K6 904 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 GPBP1Q86WP2 473 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 GRAMD1CQ8IYS0 662 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 MYCT1Q8N699 235 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 ATAD1Q8NBU5 361 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 ZSCAN18Q8TBC5 510 aaPredicted RBP11.18□□□□□ -0.62
NEDD8-202ENST00000396828 DNASE1L2Q92874 299 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 FAM212AQ96EL1 285 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 PLEKHA5Q9HAU0 1116 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 PRMT8Q9NR22 394 aaPredicted RBP11.18□□□□□ -0.62
NEDD8-202ENST00000396828 ASAH2Q9NR71 780 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 RMND1Q9NWS8 449 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 KCND2Q9NZV8 630 aa11.18□□□□□ -0.62
NEDD8-202ENST00000396828 LARSQ9P2J5 1176 aaKnown RBP11.18□□□□□ -0.62
NEDD8-202ENST00000396828 CPSF3Q9UKF6 684 aaKnown RBP11.18□□□□□ -0.62
NEDD8-202ENST00000396828 UBQLN1Q9UMX0 589 aaKnown RBP11.18□□□□□ -0.62
NEDD8-202ENST00000396828 A0A0B4J269 797 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 MTMR11A4FU01 709 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 HEPACAM2A8MVW5 462 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 K7ENM7 598 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 HNRNPDLO14979 420 aaKnown RBP11.17□□□□□ -0.62
NEDD8-202ENST00000396828 OGTO15294 1046 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 LILRB5O75023 590 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 PIGRP01833 764 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 KRT18P05783 430 aaKnown RBP11.17□□□□□ -0.62
NEDD8-202ENST00000396828 TGM1P22735 817 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 CCNE1P24864 410 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 RPS9P46781 194 aaKnown RBP11.17□□□□□ -0.62
NEDD8-202ENST00000396828 SOX9P48436 509 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 ACOT2P49753 483 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 LIG4P49917 911 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 LILRA4P59901 499 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 PPP2R3AQ06190 1150 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 DPYDQ12882 1025 aa11.17□□□□□ -0.62
NEDD8-202ENST00000396828 GPR17Q13304 367 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms