RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 KRT78Q8N1N4 520 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 TMEM117Q9H0C3 514 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 PRDM5Q9NQX1 630 aaPredicted RBP14.58□□□□□ -0.08
COL4A3-202ENST00000396578 ZMYND8Q9ULU4 1186 aaPredicted RBP14.58□□□□□ -0.08
COL4A3-202ENST00000396578 KIAA0391O15091 583 aaKnown RBP14.57□□□□□ -0.08
COL4A3-202ENST00000396578 ALDH1A1P00352 501 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 RIN3Q8TB24 985 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 SPRTNQ9H040 489 aaPredicted RBP14.57□□□□□ -0.08
COL4A3-202ENST00000396578 HEG1Q9ULI3 1381 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 PCSK7Q16549 785 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 TUBGCP4Q9UGJ1 667 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 RAD51CO43502 376 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 IRAK1P51617 712 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 ALDH6A1Q02252 535 aaKnown RBP14.57□□□□□ -0.08
COL4A3-202ENST00000396578 SERPINB12Q96P63 405 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 ZIM3Q96PE6 472 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 ZBTB1Q9Y2K1 713 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 BAZ2BQ9UIF8 2168 aaKnown RBP14.57□□□□□ -0.08
COL4A3-202ENST00000396578 GRAPQ13588 217 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 STILQ15468 1287 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 FAM83EQ2M2I3 478 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 GRAPLQ8TC17 118 aaPredicted RBP14.57□□□□□ -0.08
COL4A3-202ENST00000396578 ANKRD49Q8WVL7 239 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 C9orf72Q96LT7 481 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 SGO1Q5FBB7 561 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 TRIM65Q6PJ69 517 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 KLHL4Q9C0H6 718 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 CACNA2D2Q9NY47 1150 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 SLC30A1Q9Y6M5 507 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 CDK12Q9NYV4 1490 aaPredicted RBP14.57□□□□□ -0.08
COL4A3-202ENST00000396578 POU4F1Q01851 419 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 COG2Q14746 738 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 CYB5D1Q6P9G0 228 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 SHC4Q6S5L8 630 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 PDLIM2Q96JY6 352 aa14.57□□□□□ -0.08
COL4A3-202ENST00000396578 GALCP54803 685 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 NPEPPSP55786 919 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 CACNB2Q08289 660 aaPredicted RBP14.56□□□□□ -0.08
COL4A3-202ENST00000396578 SGSM1Q2NKQ1 1148 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 PLEKHA7Q6IQ23 1121 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 UGT3A1Q6NUS8 523 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 LAYNQ6UX15 382 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 C3orf20Q8ND61 904 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 MUC3BQ9H195 1237 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.56□□□□□ -0.08
COL4A3-202ENST00000396578 E2F8A0AVK6 867 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 USP17L10C9JJH3 530 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 EEF2KO00418 725 aaKnown RBP14.56□□□□□ -0.08
COL4A3-202ENST00000396578 SASH1O94885 1247 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 RRM2P31350 389 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 NAB2Q15742 525 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 BARGINQ6ZT62 677 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 TRAPPC11Q7Z392 1133 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 HAUS6Q7Z4H7 955 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 ISCUQ9H1K1 167 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 ARHGEF7Q14155 803 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 DMAP1Q9NPF5 467 aaPredicted RBP14.56□□□□□ -0.08
COL4A3-202ENST00000396578 SRGNP10124 158 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 FMO5P49326 533 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 PDK1Q15118 436 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 ILKAPQ9H0C8 392 aaPredicted RBP14.56□□□□□ -0.08
COL4A3-202ENST00000396578 FANCEQ9HB96 536 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 NMT2O60551 498 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 PRKCQQ04759 706 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 SCFD2Q8WU76 684 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 ERP44Q9BS26 406 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 CATSPERBQ9H7T0 1116 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 POLD4Q9HCU8 107 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 SPASTQ9UBP0 616 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 EYA4O95677 639 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 TALDO1P37837 337 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 TWF1Q12792 350 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 OR2W6PQ8NHA6 318 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 MRPL48Q96GC5 212 aaKnown RBP14.56□□□□□ -0.08
COL4A3-202ENST00000396578 CD248Q9HCU0 757 aa14.56□□□□□ -0.08
COL4A3-202ENST00000396578 DNALI1O14645 258 aaPredicted RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 PRIM2P49643 509 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 CENPCQ03188 943 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 PKN2Q16513 984 aaKnown RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 C12orf60Q5U649 245 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 JPH1Q9HDC5 661 aaPredicted RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 QRICH2Q9H0J4 1663 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 PP2D1A8MPX8 630 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 CRKP46108 304 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 ITGA8P53708 1063 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 PTGISQ16647 500 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 JAMLQ86YT9 394 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 MMP19Q99542 508 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 THUMPD3Q9BV44 507 aaKnown RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 PDGFRAP16234 1089 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 PPIL6Q8IXY8 311 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 MARCH10Q8NA82 808 aaPredicted RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 RPAP3Q9H6T3 665 aaPredicted RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 RSAD1Q9HA92 442 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 CTNNAL1Q9UBT7 734 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 ANKARQ7Z5J8 1434 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 SUGP1Q8IWZ8 645 aaKnown RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 ZBTB10Q96DT7 871 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 TRPC7Q9HCX4 862 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms