RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 FEZF2Q8TBJ5 459 aa21.8■■□□□ 1.08
CLK3-202ENST00000395066 ZBED3Q96IU2 234 aaPredicted RBP21.8■■□□□ 1.08
CLK3-202ENST00000395066 CST3P01034 146 aaPredicted RBP21.79■■□□□ 1.08
CLK3-202ENST00000395066 GLRA2P23416 452 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 ATP11AP98196 1134 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 PKN2Q16513 984 aaKnown RBP21.79■■□□□ 1.08
CLK3-202ENST00000395066 ARHGEF18Q6ZSZ5 1173 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 MAML1Q92585 1016 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 MAGEB18Q96M61 343 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 MRPL47Q9HD33 250 aaKnown RBP21.79■■□□□ 1.08
CLK3-202ENST00000395066 MAP3K20Q9NYL2 800 aaKnown RBP21.79■■□□□ 1.08
CLK3-202ENST00000395066 GRID1Q9ULK0 1009 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 TCEA3O75764 348 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 IFNB1P01574 187 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 BRD2P25440 801 aaKnown RBP21.79■■□□□ 1.08
CLK3-202ENST00000395066 TNFSF9P41273 254 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 RNF43Q68DV7 783 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 ABHD15Q6UXT9 468 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 EP400NLQ6ZTU2 488 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.79■■□□□ 1.08
CLK3-202ENST00000395066 RTKN2Q8IZC4 609 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 ZCCHC9Q8N567 271 aaKnown RBP21.79■■□□□ 1.08
CLK3-202ENST00000395066 ZNF606Q8WXB4 792 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 SLITRK1Q96PX8 696 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 TMEM121Q9BTD3 319 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 SLC5A4Q9NY91 659 aa21.79■■□□□ 1.08
CLK3-202ENST00000395066 SKAP2O75563 359 aaPredicted RBP21.78■■□□□ 1.08
CLK3-202ENST00000395066 CCNB1P14635 433 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 CYP4A22Q5TCH4 519 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 ANKMY2Q8IV38 441 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 SENP7Q9BQF6 1050 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 PITPNM3Q9BZ71 974 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 VPS37BQ9H9H4 285 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 COL11A1P12107 1806 aaPredicted RBP21.78■■□□□ 1.08
CLK3-202ENST00000395066 K7ERI5 159 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 DPEP1P16444 411 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 SKIV2L2P42285 1042 aaKnown RBP21.78■■□□□ 1.08
CLK3-202ENST00000395066 DYNLT1P63172 113 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 STAT4Q14765 748 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 NBPF12Q5TAG4 269 aaPredicted RBP21.78■■□□□ 1.08
CLK3-202ENST00000395066 PHF13Q86YI8 300 aaPredicted RBP21.78■■□□□ 1.08
CLK3-202ENST00000395066 MTMR14Q8NCE2 650 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 RDM1Q8NG50 284 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 KIAA1586Q9HCI6 787 aa21.78■■□□□ 1.08
CLK3-202ENST00000395066 MYH9P35579 1960 aaKnown RBP21.78■■□□□ 1.08
CLK3-202ENST00000395066 ATP2A2P16615 1042 aaKnown RBP21.77■■□□□ 1.08
CLK3-202ENST00000395066 HMGCS2P54868 508 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 NCOA4Q13772 614 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 MTFR1Q15390 333 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 ZBTB33Q86T24 672 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 ZBED8Q8IZ13 594 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 AGBL3Q8NEM8 1001 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 DEPTORQ8TB45 409 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 CCDC77Q9BR77 488 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 PARVAQ9NVD7 372 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 RGPD3A6NKT7 1758 aaPredicted RBP21.77■■□□□ 1.08
CLK3-202ENST00000395066 RGPD4Q7Z3J3 1758 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 FAM47DPA6NHR8 397 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 PLCB3Q01970 1234 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 SAMD7Q7Z3H4 446 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 TMEM130Q8N3G9 435 aa21.77■■□□□ 1.08
CLK3-202ENST00000395066 NSUN6Q8TEA1 469 aaKnown RBP21.77■■□□□ 1.08
CLK3-202ENST00000395066 A0A1W2PPM1 405 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 DNALI1O14645 258 aaPredicted RBP21.76■■□□□ 1.07
CLK3-202ENST00000395066 UNC5CO95185 931 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 ACVR2BQ13705 512 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 SMTNL2Q2TAL5 461 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 SCARA5Q6ZMJ2 495 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 TRABD2AQ86V40 505 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 GRAMD1AQ96CP6 724 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 SLC24A3Q9HC58 644 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 LRRD1A4D1F6 860 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 KRT15P19012 456 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 CCDC15Q0P6D6 951 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 TMEM132BQ14DG7 1078 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 EFTUD2Q15029 972 aaKnown RBP eCLIP21.76■■□□□ 1.076e-7■■■■□ 21.9
CLK3-202ENST00000395066 WDR72Q3MJ13 1102 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 ETNK1Q9HBU6 452 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 TJP2Q9UDY2 1190 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 SCINQ9Y6U3 715 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 CNTNAP2Q9UHC6 1331 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 RPA3P35244 121 aaPredicted RBP21.76■■□□□ 1.07
CLK3-202ENST00000395066 ANKRD20A2Q5SQ80 823 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 ANKRD20A1Q5TYW2 823 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 ANKRD20A3Q5VUR7 823 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 BBOF1Q8ND07 529 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 FBF1Q8TES7 1133 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 TRABDQ9H4I3 376 aa21.76■■□□□ 1.07
CLK3-202ENST00000395066 ZNF214Q9UL59 606 aaPredicted RBP21.76■■□□□ 1.07
CLK3-202ENST00000395066 TMEM191CA6NGB0 347 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 CLGNO14967 610 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 TMEM191BP0C7N4 346 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 SUPT20HL2P0C7V6 817 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 POTEJP0CG39 1038 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 MMP8P22894 467 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 HMGB2P26583 209 aaKnown RBP21.75■■□□□ 1.07
CLK3-202ENST00000395066 RTP1P59025 263 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 SUPT20HL1Q3ZLR7 823 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 XKR3Q5GH77 459 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 DCUN1D2Q6PH85 259 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms