RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TMEM130Q8N3G9 435 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 PARD3BQ8TEW8 1205 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 ACSF2Q96CM8 615 aaPredicted RBP10.91□□□□□ -0.66
COL6A3-205ENST00000392004 DUSP9Q99956 384 aaKnown RBP10.91□□□□□ -0.66
COL6A3-205ENST00000392004 FERMT1Q9BQL6 677 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 PCDHA2Q9Y5H9 948 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 MROH7Q68CQ1 1323 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 DNAJC25-GNG10A0A024R161 153 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 PODXLO00592 558 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 ADCY6O43306 1168 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 IL18RAPO95256 599 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 F2P00734 622 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 BTBD8Q5XKL5 378 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 PPP1R21Q6ZMI0 780 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 ZNF365Q70YC5 407 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 FMNL3Q8IVF7 1028 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 CYFIP2Q96F07 1278 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 SENP8Q96LD8 212 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 MSRAQ9UJ68 235 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 ADGRA3Q8IWK6 1321 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 LOC102724159A0A0B4J2E5 919 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 E7EVH7 732 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 OPA1O60313 960 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 CKBP12277 381 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 GARTP22102 1010 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 SARSP49591 514 aaKnown RBP10.91□□□□□ -0.66
COL6A3-205ENST00000392004 PWP2Q15269 919 aaKnown RBP10.91□□□□□ -0.66
COL6A3-205ENST00000392004 NT5DC1Q5TFE4 455 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 ZNF467Q7Z7K2 595 aaPredicted RBP10.91□□□□□ -0.66
COL6A3-205ENST00000392004 C1orf131Q8NDD1 294 aaKnown RBP10.91□□□□□ -0.66
COL6A3-205ENST00000392004 ZNF507Q8TCN5 953 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 RNF25Q96BH1 459 aaPredicted RBP10.91□□□□□ -0.66
COL6A3-205ENST00000392004 CISHQ9NSE2 258 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 AMFRQ9UKV5 643 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 ANKRD31Q8N7Z5 1873 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 TGFB1I1O43294 461 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 PCSK1P29120 753 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 CFAP58Q5T655 872 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 ADAM32Q8TC27 787 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 PXYLP1Q8TE99 480 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 COG1Q8WTW3 980 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 EDEM1Q92611 657 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 HPCAL4Q9UM19 191 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 MEIS3P2A8K0S8 358 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 LRG1P02750 347 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 MCF2P10911 925 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 SKIP12755 728 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 BDNFP23560 247 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 TBXAS1P24557 533 aaPredicted RBP10.9□□□□□ -0.66
COL6A3-205ENST00000392004 NDST1P52848 882 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 GJA9P57773 515 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 ZNF211Q13398 564 aaPredicted RBP10.9□□□□□ -0.66
COL6A3-205ENST00000392004 GOLGA7BQ2TAP0 167 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 SLC39A12Q504Y0 691 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 DCAF6Q58WW2 860 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 SLC24A5Q71RS6 500 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 C12orf29Q8N999 325 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 BCAS4Q8TDM0 211 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 GANCQ8TET4 914 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 CAPS2Q9BXY5 557 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 SMYD3Q9H7B4 428 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 ABHD10Q9NUJ1 306 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 SMCHD1A6NHR9 2005 aa10.9□□□□□ -0.66
COL6A3-205ENST00000392004 KPNA7A9QM74 516 aa10.9□□□□□ -0.67
COL6A3-205ENST00000392004 PI4K2BG5E9Z4 385 aa10.9□□□□□ -0.67
COL6A3-205ENST00000392004 NDUFA10O95299 355 aa10.9□□□□□ -0.67
COL6A3-205ENST00000392004 MUTP22033 750 aa10.9□□□□□ -0.67
COL6A3-205ENST00000392004 NOVP48745 357 aa10.9□□□□□ -0.67
COL6A3-205ENST00000392004 ZPBP2Q6X784 338 aa10.9□□□□□ -0.67
COL6A3-205ENST00000392004 STKLD1Q8NE28 680 aa10.9□□□□□ -0.67
COL6A3-205ENST00000392004 LRRC15Q8TF66 581 aa10.9□□□□□ -0.67
COL6A3-205ENST00000392004 RABEP2Q9H5N1 569 aa10.9□□□□□ -0.67
COL6A3-205ENST00000392004 HEY1Q9Y5J3 304 aa10.9□□□□□ -0.67
COL6A3-205ENST00000392004 COL11A2P13942 1736 aaPredicted RBP10.9□□□□□ -0.67
COL6A3-205ENST00000392004 TSPAN1O60635 241 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 ZMYND10O75800 440 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 GYPCP04921 128 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 SERPING1P05155 500 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 ODC1P11926 461 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 ATP2A2P16615 1042 aaKnown RBP10.89□□□□□ -0.67
COL6A3-205ENST00000392004 GGCXP38435 758 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 CASC4Q6P4E1 433 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 CACUL1Q86Y37 369 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 CCDC105Q8IYK2 499 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 UBL4BQ8N7F7 174 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 CEP72Q9P209 647 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 PON1P27169 355 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 SOX5P35711 763 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 AARSP49588 968 aaKnown RBP eCLIP10.89□□□□□ -0.67
COL6A3-205ENST00000392004 CUL2Q13617 745 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 MOGSQ13724 837 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 HADHQ16836 314 aaKnown RBP10.89□□□□□ -0.67
COL6A3-205ENST00000392004 SLC47A2Q86VL8 602 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 FAM228AQ86W67 206 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 PDCD6IPQ8WUM4 868 aaKnown RBP10.89□□□□□ -0.67
COL6A3-205ENST00000392004 ALG13Q9NP73 1137 aaKnown RBP10.89□□□□□ -0.67
COL6A3-205ENST00000392004 ASIC3Q9UHC3 531 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 FAM169AQ9Y6X4 670 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 CASP8AP2Q9UKL3 1982 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 NCOR1O75376 2440 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms