RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 RPGRQ92834 1020 aaKnown RBP0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 E2F7Q96AV8 911 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 FOXRED1Q96CU9 486 aaPredicted RBP0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 CEP95Q96GE4 821 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 MARS2Q96GW9 593 aaKnown RBP0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 ACO2Q99798 780 aaKnown RBP0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 C1QTNF4Q9BXJ3 329 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 PLA2G12AQ9BZM1 189 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 UNKQ9C0B0 810 aaKnown RBP0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 ZSWIM4Q9H7M6 989 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 COPRSQ9NQ92 184 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 ARHGEF3Q9NR81 526 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 KCNH7Q9NS40 1196 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 RNF19AQ9NV58 838 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 TMEM248Q9NWD8 314 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 EHD3Q9NZN3 535 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 LOC102724159A0A0B4J2E5 919 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 A0A1W2PQH9 124 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 UBE2Q2LH0YL09 131 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 TPP1O14773 563 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 MAFGO15525 162 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 PJA2O43164 708 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 CTIFO43310 598 aaKnown RBP0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 PRSS23O95084 383 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 PPP1R3DO95685 299 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 A1BGP04217 495 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 CTSHP09668 335 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 CTSAP10619 480 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 SDHAP31040 664 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 HNRNPMP52272 730 aaKnown RBP eCLIP0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 BCAR1P56945 870 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 EEFSECP57772 596 aaKnown RBP0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 GPR85P60893 370 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 RAP2BP61225 183 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 RPS7P62081 194 aaKnown RBP0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 CYP4F2P78329 520 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 BMPR2Q13873 1038 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 PWP2Q15269 919 aaKnown RBP0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 CRY1Q16526 586 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 ANO6Q4KMQ2 910 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 EGFLAMQ63HQ2 1017 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 KCNT2Q6UVM3 1135 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 TAS1R1Q7RTX1 841 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 ZNF227Q86WZ6 799 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 Q8NA96 180 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 OSR1Q8TAX0 266 aaPredicted RBP0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 PUM2Q8TB72 1066 aaKnown RBP eCLIP0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 MDM1Q8TC05 714 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 RTP4Q96DX8 246 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 MAML3Q96JK9 1138 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 PNKPQ96T60 521 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 ZFYVE21Q9BQ24 234 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 SOX7Q9BT81 388 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 NT5C1AQ9BXI3 368 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 DONSONQ9NYP3 566 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 HSFX1Q9UBD0 423 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 MED16Q9Y2X0 877 aa0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 TNPO3Q9Y5L0 923 aaKnown RBP0.05□□□□□ -2.4
RNU6-540P-201ENST00000384622 PRAMEF33A0A0G2JMD5 474 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 A0A1W2PS29 197 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 CARNS1A5YM72 827 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 H0YIZ8 118 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 PRAMEF10O60809 474 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 PRPF40AO75400 957 aaKnown RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 NFATC1O95644 943 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 P4HBP07237 508 aaKnown RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 RHOP08100 348 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 SNRPA1P09661 255 aaKnown RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 ARSAP15289 507 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 PRPH2P23942 346 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 RPS13P62277 151 aaKnown RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 ST3GAL1Q11201 340 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 MAP4K2Q12851 820 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 CD300EQ496F6 205 aaPredicted RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 SV2CQ496J9 727 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 TM4SF20Q53R12 229 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 CATSPEREQ5SY80 951 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 PRAMEF9Q5VWM5 478 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 FCRL6Q6DN72 434 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 NAPEPLDQ6IQ20 393 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 B4GALNT3Q6L9W6 998 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 RFX8Q6ZV50 586 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 PDZD4Q76G19 769 aaPredicted RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 ADIPOR2Q86V24 386 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 COL23A1Q86Y22 540 aaPredicted RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 TMEM199Q8N511 208 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 GADD45GIP1Q8TAE8 222 aaPredicted RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 TAS1R2Q8TE23 839 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 DCAF4Q8WV16 495 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 DAZAP1Q96EP5 407 aaKnown RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 DUSP9Q99956 384 aaKnown RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 MACROD1Q9BQ69 325 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 COL20A1Q9P218 1284 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 PAK5Q9P286 719 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 MYO6Q9UM54 1294 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 CELA1Q9UNI1 258 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 WBP11Q9Y2W2 641 aaKnown RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 COL16A1Q07092 1604 aaPredicted RBP0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 PNPLA7Q6ZV29 1317 aa0.04□□□□□ -2.4
RNU6-540P-201ENST00000384622 ANKHD1Q8IWZ3 2542 aaKnown RBP0.04□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms