RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 C5orf34Q96MH7 638 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 SEC62Q99442 399 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 EGFL8Q99944 293 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 OSGEPQ9NPF4 335 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 DDX19AQ9NUU7 478 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 TLK1Q9UKI8 766 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 PKP3Q9Y446 797 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 FHOD1Q9Y613 1164 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 NCAPD2Q15021 1401 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 CDK13Q14004 1512 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 A0A1W2PQ67 120 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 OR6C75A6NL08 312 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 TTI1O43156 1089 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ALOX15P16050 662 aaPredicted RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 ZFXP17010 805 aaPredicted RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 CAP2P40123 477 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ARL4CP56559 192 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 TTI2Q6NXR4 508 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 AGMOQ6ZNB7 445 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 KCTD1Q719H9 257 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 RNF135Q8IUD6 432 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 FAF2Q96CS3 445 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 PRPF18Q99633 342 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 OSBPL6Q9BZF3 934 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.3□□□□□ -1.72
USH2A-202ENST00000366942 MINPP1Q9UNW1 487 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ARHGAP31Q2M1Z3 1444 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 DNM1LO00429 736 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ZBTB5O15062 677 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 IGSF6O95976 241 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 F9P00740 461 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 PSEN1P49768 467 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 RAP1GDS1P52306 607 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 GAD2Q05329 585 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 CYP2A13Q16696 494 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 NOMO2Q5JPE7 1267 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 DNAJC24Q6P3W2 148 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ZNF410Q86VK4 478 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 NPAS4Q8IUM7 802 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.3□□□□□ -1.72
USH2A-202ENST00000366942 GUF1Q8N442 669 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 AOPEPQ8N6M6 819 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 RHBDD1Q8TEB9 315 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 USP7Q93009 1102 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 UCN3Q969E3 161 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 GPR63Q9BZJ6 419 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 USP44Q9H0E7 712 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 UNC45AQ9H3U1 944 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 GREM2Q9H772 168 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ERVK-11Q9UQG0 969 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ANKRD6Q9Y2G4 727 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 PCDHGA4Q9Y5G9 962 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 NUP153P49790 1475 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 NRCAMQ92823 1304 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 SYNRGQ9UMZ2 1314 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ACOT7O00154 380 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 SCGB2A1O75556 95 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ELNP15502 786 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 TAC1P20366 129 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 DDX6P26196 483 aaKnown RBP eCLIP4.3□□□□□ -1.72
USH2A-202ENST00000366942 CACNB3P54284 484 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 NPEPPSP55786 919 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 NLRP11P59045 1033 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 GRIN1Q05586 938 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 PSMD5Q16401 504 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 FAM47AQ5JRC9 791 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 MANEAQ5SRI9 462 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 DENND2CQ68D51 928 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 JADE1Q6IE81 842 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 CCDC62Q6P9F0 684 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 GBP6Q6ZN66 633 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 METTL16Q86W50 562 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 SIRT2Q8IXJ6 389 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 LMNTD2Q8IXW0 634 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 KCTD17Q8N5Z5 321 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 WHAMMQ8TF30 809 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 GRK7Q8WTQ7 553 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 TUBGCP3Q96CW5 907 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 PIGSQ96S52 555 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 P2RX7Q99572 595 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 PARVGQ9HBI0 331 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 VPS28Q9UK41 221 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ADGRA2Q96PE1 1338 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 TARSL2A2RTX5 802 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 CPED1A4D0V7 1026 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 MYO1GB0I1T2 1018 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 B4E1Z4 1266 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 CHL1O00533 1208 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 PER2O15055 1255 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 CYP2C8P10632 490 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 EEF1GP26641 437 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 PRAMEP78395 509 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 OC90Q02509 493 aaPredicted RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 CSTF1Q05048 431 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 DNM1Q05193 864 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 ORC2Q13416 577 aaPredicted RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 SPDYE7PQ495Y7 208 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 PRICKLE2Q7Z3G6 844 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 C12orf40Q86WS4 652 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms