RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 DHTKD1Q96HY7 919 aaPredicted RBP2.55□□□□□ -2
VPS54-202ENST00000354504 KREMEN1Q96MU8 473 aa2.55□□□□□ -2
VPS54-202ENST00000354504 INPP4AQ96PE3 977 aaPredicted RBP2.55□□□□□ -2
VPS54-202ENST00000354504 DUSP23Q9BVJ7 150 aa2.55□□□□□ -2
VPS54-202ENST00000354504 WDR11Q9BZH6 1224 aa2.55□□□□□ -2
VPS54-202ENST00000354504 GP6Q9HCN6 339 aa2.55□□□□□ -2
VPS54-202ENST00000354504 CRTAC1Q9NQ79 661 aa2.55□□□□□ -2
VPS54-202ENST00000354504 DDX56Q9NY93 547 aaKnown RBP2.55□□□□□ -2
VPS54-202ENST00000354504 BTBD7Q9P203 1132 aa2.55□□□□□ -2
VPS54-202ENST00000354504 ZNF215Q9UL58 517 aaPredicted RBP2.55□□□□□ -2
VPS54-202ENST00000354504 CNTN6Q9UQ52 1028 aa2.55□□□□□ -2
VPS54-202ENST00000354504 ZNF281Q9Y2X9 895 aa2.55□□□□□ -2
VPS54-202ENST00000354504 CAPN6Q9Y6Q1 641 aa2.55□□□□□ -2
VPS54-202ENST00000354504 A0A0G2JLL6 359 aaPredicted RBP2.55□□□□□ -2
VPS54-202ENST00000354504 TMEM150BA6NC51 233 aa2.55□□□□□ -2
VPS54-202ENST00000354504 H0YGN5 161 aa2.55□□□□□ -2
VPS54-202ENST00000354504 H0YIN7 160 aa2.55□□□□□ -2
VPS54-202ENST00000354504 KINO60870 393 aaKnown RBP2.55□□□□□ -2
VPS54-202ENST00000354504 KCNH1O95259 989 aa2.55□□□□□ -2
VPS54-202ENST00000354504 PRAMEF1O95521 474 aa2.55□□□□□ -2
VPS54-202ENST00000354504 EYA4O95677 639 aa2.55□□□□□ -2
VPS54-202ENST00000354504 NCLP19338 710 aaKnown RBP2.55□□□□□ -2
VPS54-202ENST00000354504 EEF1GP26641 437 aaKnown RBP2.55□□□□□ -2
VPS54-202ENST00000354504 CTGFP29279 349 aa2.55□□□□□ -2
VPS54-202ENST00000354504 KIF5BP33176 963 aa2.55□□□□□ -2
VPS54-202ENST00000354504 AFMP43652 599 aa2.55□□□□□ -2
VPS54-202ENST00000354504 ADCY7P51828 1080 aa2.55□□□□□ -2
VPS54-202ENST00000354504 DLG4P78352 724 aa2.55□□□□□ -2
VPS54-202ENST00000354504 GTF2BQ00403 316 aa2.55□□□□□ -2
VPS54-202ENST00000354504 TCP10Q12799 353 aa2.55□□□□□ -2
VPS54-202ENST00000354504 MTMR1Q13613 665 aa2.55□□□□□ -2
VPS54-202ENST00000354504 AUHQ13825 339 aaKnown RBP2.55□□□□□ -2
VPS54-202ENST00000354504 CCDC96Q2M329 555 aa2.55□□□□□ -2
VPS54-202ENST00000354504 TNFAIP8L3Q5GJ75 292 aa2.55□□□□□ -2
VPS54-202ENST00000354504 KLHDC7AQ5VTJ3 777 aa2.55□□□□□ -2
VPS54-202ENST00000354504 SLFN13Q68D06 897 aa2.55□□□□□ -2
VPS54-202ENST00000354504 SLC6A19Q695T7 634 aa2.55□□□□□ -2
VPS54-202ENST00000354504 ABHD15Q6UXT9 468 aa2.55□□□□□ -2
VPS54-202ENST00000354504 NFXL1Q6ZNB6 911 aa2.55□□□□□ -2
VPS54-202ENST00000354504 CATSPERGQ6ZRH7 1159 aa2.55□□□□□ -2
VPS54-202ENST00000354504 ARHGAP27Q6ZUM4 889 aa2.55□□□□□ -2
VPS54-202ENST00000354504 ZNF765Q7L2R6 523 aa2.55□□□□□ -2
VPS54-202ENST00000354504 TMC6Q7Z403 805 aa2.55□□□□□ -2
VPS54-202ENST00000354504 LIMS2Q7Z4I7 341 aa2.55□□□□□ -2
VPS54-202ENST00000354504 HEATR3Q7Z4Q2 680 aa2.55□□□□□ -2
VPS54-202ENST00000354504 PRRT2Q7Z6L0 340 aaPredicted RBP2.55□□□□□ -2
VPS54-202ENST00000354504 DDX42Q86XP3 938 aaKnown RBP eCLIP2.55□□□□□ -2
VPS54-202ENST00000354504 HID1Q8IV36 788 aa2.55□□□□□ -2
VPS54-202ENST00000354504 DRC7Q8IY82 874 aa2.55□□□□□ -2
VPS54-202ENST00000354504 CEP57L1Q8IYX8 460 aa2.55□□□□□ -2
VPS54-202ENST00000354504 RTKN2Q8IZC4 609 aa2.55□□□□□ -2
VPS54-202ENST00000354504 PDILTQ8N807 584 aa2.55□□□□□ -2
VPS54-202ENST00000354504 KIF18AQ8NI77 898 aa2.55□□□□□ -2
VPS54-202ENST00000354504 SYTL5Q8TDW5 730 aaPredicted RBP2.55□□□□□ -2
VPS54-202ENST00000354504 NUP210Q8TEM1 1887 aaPredicted RBP2.55□□□□□ -2
VPS54-202ENST00000354504 MISP3Q96FF7 219 aa2.55□□□□□ -2
VPS54-202ENST00000354504 SGSM3Q96HU1 749 aa2.55□□□□□ -2
VPS54-202ENST00000354504 ZSWIM1Q9BR11 485 aa2.55□□□□□ -2
VPS54-202ENST00000354504 TLR10Q9BXR5 811 aa2.55□□□□□ -2
VPS54-202ENST00000354504 FUT8Q9BYC5 575 aa2.55□□□□□ -2
VPS54-202ENST00000354504 MAF1Q9H063 256 aa2.55□□□□□ -2
VPS54-202ENST00000354504 IRF2BPLQ9H1B7 796 aa2.55□□□□□ -2
VPS54-202ENST00000354504 CXCL16Q9H2A7 254 aa2.55□□□□□ -2
VPS54-202ENST00000354504 PTPRHQ9HD43 1115 aa2.55□□□□□ -2
VPS54-202ENST00000354504 TXNRD2Q9NNW7 524 aa2.55□□□□□ -2
VPS54-202ENST00000354504 CNTNAP2Q9UHC6 1331 aa2.55□□□□□ -2
VPS54-202ENST00000354504 DDX25Q9UHL0 483 aaKnown RBP2.55□□□□□ -2
VPS54-202ENST00000354504 HACL1Q9UJ83 578 aa2.55□□□□□ -2
VPS54-202ENST00000354504 NOCTQ9UK39 431 aaKnown RBP2.55□□□□□ -2
VPS54-202ENST00000354504 COG5Q9UP83 839 aa2.55□□□□□ -2
VPS54-202ENST00000354504 COQ4Q9Y3A0 265 aa2.55□□□□□ -2
VPS54-202ENST00000354504 TNPO3Q9Y5L0 923 aaKnown RBP2.55□□□□□ -2
VPS54-202ENST00000354504 NFS1Q9Y697 457 aa2.55□□□□□ -2
VPS54-202ENST00000354504 UQCRHLA0A096LP55 91 aa2.54□□□□□ -2
VPS54-202ENST00000354504 FAM170BA6NMN3 283 aa2.54□□□□□ -2
VPS54-202ENST00000354504 BECN2A8MW95 431 aa2.54□□□□□ -2
VPS54-202ENST00000354504 H7C1D1 291 aa2.54□□□□□ -2
VPS54-202ENST00000354504 KCNK3O14649 394 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PRODHO43272 600 aa2.54□□□□□ -2
VPS54-202ENST00000354504 RAD17O75943 681 aa2.54□□□□□ -2
VPS54-202ENST00000354504 NPTXRO95502 500 aa2.54□□□□□ -2
VPS54-202ENST00000354504 UQCRHP07919 91 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CDK11BP21127 795 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 PON1P27169 355 aa2.54□□□□□ -2
VPS54-202ENST00000354504 HOXA13P31271 388 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 ICAM3P32942 547 aa2.54□□□□□ -2
VPS54-202ENST00000354504 GRIK1P39086 918 aa2.54□□□□□ -2
VPS54-202ENST00000354504 UBASH3AP57075 661 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PAK1Q13153 545 aa2.54□□□□□ -2
VPS54-202ENST00000354504 SART3Q15020 963 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 ABCB5Q2M3G0 1257 aa2.54□□□□□ -2
VPS54-202ENST00000354504 HSP90AA4PQ58FG1 418 aa2.54□□□□□ -2
VPS54-202ENST00000354504 BEND6Q5SZJ8 279 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 EMC10Q5UCC4 262 aa2.54□□□□□ -2
VPS54-202ENST00000354504 RNF43Q68DV7 783 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CCDC62Q6P9F0 684 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CYP4V2Q6ZWL3 525 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 ZNF720Q7Z2F6 126 aa2.54□□□□□ -2
VPS54-202ENST00000354504 LRRTM3Q86VH5 581 aa2.54□□□□□ -2
VPS54-202ENST00000354504 NIM1KQ8IY84 436 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms