RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SLC39A10Q9ULF5 831 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 ANKARQ7Z5J8 1434 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 MAGI2Q86UL8 1455 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 S100A5P33763 92 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 MLH1P40692 756 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 KYAT1Q16773 422 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 MROH9Q5TGP6 573 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 GJB7Q6PEY0 223 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 HASPINQ8TF76 798 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 TUFT1Q9NNX1 390 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 GIMAP4Q9NUV9 329 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 ITIH6Q6UXX5 1313 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 LOC100653049A0A140TA62 436 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 PMPCBO75439 489 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 KRT34O76011 436 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 GTF2H1P32780 548 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 CDH18Q13634 790 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 DHX34Q14147 1143 aaKnown RBP13.17□□□□□ -0.3
SDC3-201ENST00000336798 CENPPQ6IPU0 288 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 MAGED4Q96JG8 741 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 OLFM3Q96PB7 478 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 KATNAL1Q9BW62 490 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 CINPQ9BW66 212 aaPredicted RBP13.17□□□□□ -0.3
SDC3-201ENST00000336798 UGGT1Q9NYU2 1555 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 LZTS3O60299 673 aaPredicted RBP13.17□□□□□ -0.3
SDC3-201ENST00000336798 OOSP2Q86WS3 158 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 MTIF3Q9H2K0 278 aaKnown RBP13.17□□□□□ -0.3
SDC3-201ENST00000336798 GGA3Q9NZ52 723 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 ALDH1A2O94788 518 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 SNAPC2Q13487 334 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 BRINP3Q76B58 766 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 FAM71DQ8N9W8 422 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 BLOC1S5Q8TDH9 187 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 HEATR9A2RTY3 570 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 TTLL13PA6NNM8 815 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 CYP19A1P11511 503 aaPredicted RBP13.17□□□□□ -0.3
SDC3-201ENST00000336798 CYP2C9P11712 490 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 GALCP54803 685 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 GUF1Q8N442 669 aaKnown RBP13.17□□□□□ -0.3
SDC3-201ENST00000336798 SPATA4Q8NEY3 305 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 SPATA18Q8TC71 538 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 RASSF9O75901 435 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 SERPINB10P48595 397 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 STAT4Q14765 748 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 GLB1LQ6UWU2 654 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 C3orf62Q6ZUJ4 267 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 IL17RAQ96F46 866 aa13.17□□□□□ -0.3
SDC3-201ENST00000336798 SNUPNO95149 360 aaKnown RBP13.16□□□□□ -0.3
SDC3-201ENST00000336798 ALOX15P16050 662 aaPredicted RBP13.16□□□□□ -0.3
SDC3-201ENST00000336798 GALNTL6Q49A17 601 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 GNASQ5JWF2 1037 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 GPAT2Q6NUI2 795 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 KIF2BQ8N4N8 673 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 WDR24Q96S15 920 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 TMEM245Q9H330 911 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 ATP7BP35670 1465 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 CLASP2O75122 1294 aaKnown RBP13.16□□□□□ -0.3
SDC3-201ENST00000336798 CELF2O95319 508 aaKnown RBP13.16□□□□□ -0.3
SDC3-201ENST00000336798 POU4F1Q01851 419 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 SGSM1Q2NKQ1 1148 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 FGD2Q7Z6J4 655 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 GOLPH3Q9H4A6 298 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 ENTPD7Q9NQZ7 604 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 WWOXQ9NZC7 414 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 THPOP40225 353 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 SLC1A1P43005 524 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 SV2CQ496J9 727 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 ARHGAP17Q68EM7 881 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 AGPAT5Q9NUQ2 364 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 HACL1Q9UJ83 578 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 TPST1O60507 370 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 PHF2O75151 1096 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 ZNF189O75820 626 aaPredicted RBP13.16□□□□□ -0.3
SDC3-201ENST00000336798 RPS7P62081 194 aaKnown RBP13.16□□□□□ -0.3
SDC3-201ENST00000336798 XKR3Q5GH77 459 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 EFCAB6Q5THR3 1501 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 KCNV1Q6PIU1 500 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 PRPF39Q86UA1 669 aaKnown RBP13.16□□□□□ -0.3
SDC3-201ENST00000336798 CARNMT1Q8N4J0 409 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 CELF4Q9BZC1 486 aaKnown RBP13.16□□□□□ -0.3
SDC3-201ENST00000336798 DNAJC5Q9H3Z4 198 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 CATSPERBQ9H7T0 1116 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 ETAA1Q9NY74 926 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 AXIN2Q9Y2T1 843 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 FHOD1Q9Y613 1164 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 COPG1Q9Y678 874 aaKnown RBP13.16□□□□□ -0.3
SDC3-201ENST00000336798 AATKQ6ZMQ8 1374 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 PRR36Q9H6K5 1346 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 CCL15-CCL14A0A0B4J2E2 113 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 ITGB3P05106 788 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 FMO5P49326 533 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 KCNK10P57789 538 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 ATP2C1P98194 919 aaPredicted RBP13.16□□□□□ -0.3
SDC3-201ENST00000336798 CCL15Q16663 113 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 LRRC8BQ6P9F7 803 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 OTOAQ7RTW8 1153 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 BBS2Q9BXC9 721 aa13.16□□□□□ -0.3
SDC3-201ENST00000336798 PTCH1Q13635 1447 aa13.15□□□□□ -0.3
SDC3-201ENST00000336798 UBTFL6P0CB48 400 aaPredicted RBP13.15□□□□□ -0.3
SDC3-201ENST00000336798 TRADDQ15628 312 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms