RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 MTIF3Q9H2K0 278 aaKnown RBP17.67■□□□□ 0.42
SHOX-201ENST00000334060 GDAP2Q9NXN4 497 aa17.67■□□□□ 0.42
SHOX-201ENST00000334060 SOX1O00570 391 aaPredicted RBP17.66■□□□□ 0.42
SHOX-201ENST00000334060 CYP26A1O43174 497 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 ATICP31939 592 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 BMP8BP34820 402 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 CTNNB1P35222 781 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 NDST1P52848 882 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 SV2CQ496J9 727 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 TMEM270Q6UE05 265 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 C12orf29Q8N999 325 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 DDX27Q96GQ7 796 aaKnown RBP17.66■□□□□ 0.42
SHOX-201ENST00000334060 PDLIM2Q96JY6 352 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 SUSD3Q96L08 255 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 UROC1Q96N76 676 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 TMEM175Q9BSA9 504 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 RHOBTB2Q9BYZ6 727 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 M0QZQ0 153 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 MFAP3LO75121 409 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 FGF18O76093 207 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 STAU1O95793 577 aaKnown RBP17.66■□□□□ 0.42
SHOX-201ENST00000334060 CDC25BP30305 580 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 GCNT1Q02742 428 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 CAMK1Q14012 370 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 PDXDC1Q6P996 788 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 WDR59Q6PJI9 974 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 CCDC186Q7Z3E2 898 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 SLC47A2Q86VL8 602 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 RNF168Q8IYW5 571 aaPredicted RBP17.66■□□□□ 0.42
SHOX-201ENST00000334060 ADGRF2Q8IZF7 708 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 SLC20A1Q8WUM9 679 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 TFAP2BQ92481 460 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 SHC3Q92529 594 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 ZNF830Q96NB3 372 aaPredicted RBP17.66■□□□□ 0.42
SHOX-201ENST00000334060 TSPAN18Q96SJ8 248 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 CEP72Q9P209 647 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 UNC80Q8N2C7 3258 aa17.66■□□□□ 0.42
SHOX-201ENST00000334060 TMEM189-UBE2V1I3L0A0 370 aa17.65■□□□□ 0.42
SHOX-201ENST00000334060 KRT9P35527 623 aa17.65■□□□□ 0.42
SHOX-201ENST00000334060 IRS1P35568 1242 aa17.65■□□□□ 0.42
SHOX-201ENST00000334060 LRRTM3Q86VH5 581 aa17.65■□□□□ 0.42
SHOX-201ENST00000334060 TMLHEQ9NVH6 421 aa17.65■□□□□ 0.42
SHOX-201ENST00000334060 CAPN11Q9UMQ6 739 aa17.65■□□□□ 0.42
SHOX-201ENST00000334060 R3HCC1Q9Y3T6 440 aaKnown RBP17.65■□□□□ 0.42
SHOX-201ENST00000334060 PCDHB4Q9Y5E5 795 aa17.65■□□□□ 0.42
SHOX-201ENST00000334060 C5orf42Q9H799 3197 aa17.65■□□□□ 0.42
SHOX-201ENST00000334060 GRM6O15303 877 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 CILPO75339 1184 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 TPM3P06753 285 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 KRT5P13647 590 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 LAG3P18627 525 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 RAD23BP54727 409 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 ERVFC1P60507 584 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 CACNA2D4Q7Z3S7 1137 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 ACOT1Q86TX2 421 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 PALB2Q86YC2 1186 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 SLC4A11Q8NBS3 891 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 APPL2Q8NEU8 664 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 OR6B3Q8NGW1 331 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 FEZF2Q8TBJ5 459 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 CHP1Q99653 195 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.64■□□□□ 0.41
SHOX-201ENST00000334060 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.64■□□□□ 0.41
SHOX-201ENST00000334060 BMPR1AP36894 532 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 PNPLA4P41247 253 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 VARS2Q5ST30 1063 aaKnown RBP17.64■□□□□ 0.41
SHOX-201ENST00000334060 DPH6Q7L8W6 267 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 RBBP8NLQ8NC74 664 aaPredicted RBP17.64■□□□□ 0.41
SHOX-201ENST00000334060 COLEC11Q9BWP8 271 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 STK33Q9BYT3 514 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 CRTAC1Q9NQ79 661 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 FAM49BQ9NUQ9 324 aa17.64■□□□□ 0.41
SHOX-201ENST00000334060 DDX43Q9NXZ2 648 aaKnown RBP17.64■□□□□ 0.41
SHOX-201ENST00000334060 GABRDO14764 452 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 HUS1O60921 280 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 BRD2P25440 801 aaKnown RBP17.63■□□□□ 0.41
SHOX-201ENST00000334060 TAF3Q5VWG9 929 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 IRF2BP2Q7Z5L9 587 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 VPS52Q8N1B4 723 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 STKLD1Q8NE28 680 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 GDPD5Q8WTR4 605 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 ARNTL2Q8WYA1 636 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 TAF4BQ92750 862 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 SPAG5Q96R06 1193 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 ABHD10Q9NUJ1 306 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 TMEM30AQ9NV96 361 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 SPG21Q9NZD8 308 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 PRDM4Q9UKN5 801 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 PCDHA11Q9Y5I1 949 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 ATG2AQ2TAZ0 1938 aa17.63■□□□□ 0.41
SHOX-201ENST00000334060 MYBPHLA2RUH7 354 aa17.62■□□□□ 0.41
SHOX-201ENST00000334060 CLDN5O00501 218 aa17.62■□□□□ 0.41
SHOX-201ENST00000334060 FGFR3P22607 806 aa17.62■□□□□ 0.41
SHOX-201ENST00000334060 ZNF132P52740 706 aa17.62■□□□□ 0.41
SHOX-201ENST00000334060 MFAP3P55082 362 aa17.62■□□□□ 0.41
SHOX-201ENST00000334060 MTF1Q14872 753 aa17.62■□□□□ 0.41
SHOX-201ENST00000334060 FIGNQ5HY92 759 aa17.62■□□□□ 0.41
SHOX-201ENST00000334060 HGSNATQ68CP4 663 aa17.62■□□□□ 0.41
SHOX-201ENST00000334060 NOP9Q86U38 636 aaKnown RBP17.62■□□□□ 0.41
SHOX-201ENST00000334060 FAM71AQ8IYT1 594 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms