RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 DDR2Q16832 855 aa14.88□□□□□ -0.03
COL7A1-201ENST00000328333 CYP4Z1Q86W10 505 aa14.88□□□□□ -0.03
COL7A1-201ENST00000328333 CCDC33Q8N5R6 958 aa14.88□□□□□ -0.03
COL7A1-201ENST00000328333 CAPZA2P47755 286 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 USP11P51784 963 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 ATP2C1P98194 919 aaPredicted RBP14.87□□□□□ -0.03
COL7A1-201ENST00000328333 PDIA5Q14554 519 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 USP38Q8NB14 1042 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 TRIM51Q9BSJ1 452 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 JAK1P23458 1154 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 AHI1Q8N157 1196 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 TNIP3Q96KP6 325 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 APOL6Q9BWW8 343 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 PCIF1Q9H4Z3 704 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 RPRD1BQ9NQG5 326 aaKnown RBP14.87□□□□□ -0.03
COL7A1-201ENST00000328333 CYP2D7A0A087X1C5 515 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 CD2BP2O95400 341 aaKnown RBP14.87□□□□□ -0.03
COL7A1-201ENST00000328333 FAM200BP0CF97 657 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 PTPN4P29074 926 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 GPC3P51654 580 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 CYP4Z2PQ8N1L4 340 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 UBXN6Q9BZV1 441 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 TAGLN3Q9UI15 199 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 A0A087WXM4 84 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 TAF4O00268 1085 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 P4HA2O15460 535 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 WARSP23381 471 aaKnown RBP14.87□□□□□ -0.03
COL7A1-201ENST00000328333 TARSP26639 723 aaKnown RBP14.87□□□□□ -0.03
COL7A1-201ENST00000328333 BCAP31P51572 246 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 SCARA5Q6ZMJ2 495 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 YTHDF3Q7Z739 585 aaKnown RBP14.87□□□□□ -0.03
COL7A1-201ENST00000328333 KRT78Q8N1N4 520 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 GHRP10912 638 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 MLNP12872 115 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 GNL1P36915 607 aaPredicted RBP14.87□□□□□ -0.03
COL7A1-201ENST00000328333 BCAMP50895 628 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 CRELD2Q6UXH1 353 aaPredicted RBP14.87□□□□□ -0.03
COL7A1-201ENST00000328333 SLC10A4Q96EP9 437 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 RGS21Q2M5E4 152 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 CDC73Q6P1J9 531 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 GOLPH3Q9H4A6 298 aa14.87□□□□□ -0.03
COL7A1-201ENST00000328333 PRLRP16471 622 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 TPI1P60174 286 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 RSBN1Q5VWQ0 802 aaPredicted RBP14.86□□□□□ -0.03
COL7A1-201ENST00000328333 OR8H2Q8N162 312 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 SPATA18Q8TC71 538 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 USP33Q8TEY7 942 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 C11orf70Q9BRQ4 267 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 L2HGDHQ9H9P8 463 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 CACNA1CQ13936 2221 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 KCNT1Q5JUK3 1230 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 AGAP9Q5VTM2 703 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 ULK2Q8IYT8 1036 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 S100ZQ8WXG8 99 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 SPATA2Q9UM82 520 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 GJA3Q9Y6H8 435 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 ZNF23P17027 643 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 FBLN1P23142 703 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 OASLQ15646 514 aaKnown RBP14.86□□□□□ -0.03
COL7A1-201ENST00000328333 CYP4A22Q5TCH4 519 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 KIAA0408Q6ZU52 694 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 DPP9Q86TI2 863 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 CCDC28BQ9BUN5 200 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 PCMTD2Q9NV79 361 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 MYRFQ9Y2G1 1151 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.86□□□□□ -0.03
COL7A1-201ENST00000328333 NUDT18Q6ZVK8 323 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 ZCCHC7Q8N3Z6 543 aaKnown RBP14.86□□□□□ -0.03
COL7A1-201ENST00000328333 TASP1Q9H6P5 420 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 GDAQ9Y2T3 454 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 M0QYV0 167 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 UBE2OQ9C0C9 1292 aaKnown RBP14.86□□□□□ -0.03
COL7A1-201ENST00000328333 FBXO40Q9UH90 709 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 C15orf41Q9Y2V0 281 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 PADI6Q6TGC4 694 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 C3orf62Q6ZUJ4 267 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 FASTKD5Q7L8L6 764 aaKnown RBP14.86□□□□□ -0.03
COL7A1-201ENST00000328333 IARS2Q9NSE4 1012 aaKnown RBP14.86□□□□□ -0.03
COL7A1-201ENST00000328333 F8VZ95 297 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 C21orf59P57076 290 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 CHRNDQ07001 517 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 MTMR1Q13613 665 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 NDFIP2Q9NV92 336 aa14.86□□□□□ -0.03
COL7A1-201ENST00000328333 PIPSLA2A3N6 862 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 FDFT1P37268 417 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 LLGL1Q15334 1064 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 SPDYCQ5MJ68 293 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 VAV3Q9UKW4 847 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 TMCC3Q9ULS5 477 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 UGGT1Q9NYU2 1555 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 POTECB2RU33 542 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 DMPKQ09013 629 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 B3GNT6Q6ZMB0 384 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 BARGINQ6ZT62 677 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 NYAP1Q6ZVC0 841 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 JAMLQ86YT9 394 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 C18orf8Q96DM3 657 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 SRRM3A6NNA2 597 aaPredicted RBP14.85□□□□□ -0.03
COL7A1-201ENST00000328333 AP1S2P56377 157 aa14.85□□□□□ -0.03
COL7A1-201ENST00000328333 KYQ8NBH2 561 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms