RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 TJP2Q9UDY2 1190 aa19.6■□□□□ 0.73
USP39-201ENST00000323701 TRIM17Q9Y577 477 aa19.6■□□□□ 0.73
USP39-201ENST00000323701 KCNE1P15382 129 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 LPIN1Q14693 890 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 ZNF618Q5T7W0 954 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 DAB2IPQ5VWQ8 1189 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 TRIM72Q6ZMU5 477 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 SLAIN1Q8ND83 568 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 BEST2Q8NFU1 509 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 FAM105AQ9NUU6 356 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 A0A1W2PQ45 241 aaPredicted RBP19.59■□□□□ 0.73
USP39-201ENST00000323701 A0A1W2PQY0 241 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 PIRO00625 290 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 CYP3A5P20815 502 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 MMP8P22894 467 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 TNNC1P63316 161 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 PTPN11Q06124 597 aaPredicted RBP19.59■□□□□ 0.73
USP39-201ENST00000323701 INCA1Q0VD86 236 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 KCTD19Q17RG1 926 aaPredicted RBP19.59■□□□□ 0.73
USP39-201ENST00000323701 CCDC181Q5TID7 509 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 AADACL2Q6P093 401 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 TMEM176AQ96HP8 235 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 LPIN3Q9BQK8 851 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 CYP3A43Q9HB55 503 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 ERVK-5Q9HDB9 667 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 UVRAGQ9P2Y5 699 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 UBQLN1Q9UMX0 589 aaKnown RBP19.59■□□□□ 0.73
USP39-201ENST00000323701 PCDHGC3Q9UN70 934 aa19.59■□□□□ 0.73
USP39-201ENST00000323701 CEP104O60308 925 aa19.58■□□□□ 0.72
USP39-201ENST00000323701 MAMLD1Q13495 774 aa19.58■□□□□ 0.72
USP39-201ENST00000323701 C12orf29Q8N999 325 aa19.58■□□□□ 0.72
USP39-201ENST00000323701 HDAC7Q8WUI4 952 aa19.58■□□□□ 0.72
USP39-201ENST00000323701 CD101Q93033 1021 aa19.58■□□□□ 0.72
USP39-201ENST00000323701 FAXDC2Q96IV6 333 aa19.58■□□□□ 0.72
USP39-201ENST00000323701 GLT1D1Q96MS3 346 aa19.58■□□□□ 0.72
USP39-201ENST00000323701 AVENQ9NQS1 362 aaPredicted RBP19.58■□□□□ 0.72
USP39-201ENST00000323701 MIOSQ9NXC5 875 aa19.58■□□□□ 0.72
USP39-201ENST00000323701 ANAPC7Q9UJX3 599 aa19.58■□□□□ 0.72
USP39-201ENST00000323701 CLCN6P51797 869 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 YWHAEP62258 255 aaKnown RBP19.57■□□□□ 0.72
USP39-201ENST00000323701 MYO1EQ12965 1108 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 PTK7Q13308 1070 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 ZNF211Q13398 564 aaPredicted RBP19.57■□□□□ 0.72
USP39-201ENST00000323701 SOWAHAQ2M3V2 549 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 CFAP221Q4G0U5 840 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 MSANTD4Q8NCY6 345 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 ZNF446Q9NWS9 450 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 BARX2Q9UMQ3 279 aaPredicted RBP19.57■□□□□ 0.72
USP39-201ENST00000323701 NOD1Q9Y239 953 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 FRMPD3Q5JV73 1810 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 PAEPP09466 180 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 P4HA1P13674 534 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 IBSPP21815 317 aaPredicted RBP19.57■□□□□ 0.72
USP39-201ENST00000323701 CDH5P33151 784 aaPredicted RBP19.57■□□□□ 0.72
USP39-201ENST00000323701 MLH1P40692 756 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 MBTPS1Q14703 1052 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 CYP4A22Q5TCH4 519 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 DPH6Q7L8W6 267 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 PPP1R10Q96QC0 940 aaKnown RBP19.57■□□□□ 0.72
USP39-201ENST00000323701 GAD1Q99259 594 aa19.57■□□□□ 0.72
USP39-201ENST00000323701 MOXD2PA6NHM9 499 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 TLR3O15455 904 aaKnown RBP19.56■□□□□ 0.72
USP39-201ENST00000323701 CABYRO75952 493 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 CBX1P83916 185 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 C1QBPQ07021 282 aaKnown RBP19.56■□□□□ 0.72
USP39-201ENST00000323701 PLEKHA7Q6IQ23 1121 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 TRAF7Q6Q0C0 670 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 AGMOQ6ZNB7 445 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 LRRC52Q8N7C0 313 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 USP38Q8NB14 1042 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 HEXIM2Q96MH2 286 aaKnown RBP19.56■□□□□ 0.72
USP39-201ENST00000323701 UNC93B1Q9H1C4 597 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 SPDYE4A6NLX3 237 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 ZMYND10O75800 440 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 LSM8O95777 96 aaKnown RBP19.56■□□□□ 0.72
USP39-201ENST00000323701 MYBL1P10243 752 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 ATF7P17544 494 aaPredicted RBP19.56■□□□□ 0.72
USP39-201ENST00000323701 PAFAH1B1P43034 410 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 PEX5P50542 639 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 RPL7AP62424 266 aaKnown RBP19.56■□□□□ 0.72
USP39-201ENST00000323701 PTPN20Q4JDL3 420 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 TMEM35BQ8NCS4 154 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 PBKQ96KB5 322 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 RPGRIP1Q96KN7 1286 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 LRRC1Q9BTT6 524 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 SAGE1Q9NXZ1 904 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 NR2E1Q9Y466 385 aa19.56■□□□□ 0.72
USP39-201ENST00000323701 TCRBV5S1A1TA0A578 114 aa19.55■□□□□ 0.72
USP39-201ENST00000323701 O00370 1275 aa19.55■□□□□ 0.72
USP39-201ENST00000323701 CES2O00748 559 aa19.55■□□□□ 0.72
USP39-201ENST00000323701 GPR182O15218 404 aa19.55■□□□□ 0.72
USP39-201ENST00000323701 FGFR1P11362 822 aa19.55■□□□□ 0.72
USP39-201ENST00000323701 VSNL1P62760 191 aa19.55■□□□□ 0.72
USP39-201ENST00000323701 ITIH3Q06033 890 aa19.55■□□□□ 0.72
USP39-201ENST00000323701 KBTBD7Q8WVZ9 684 aa19.55■□□□□ 0.72
USP39-201ENST00000323701 VCPIP1Q96JH7 1222 aa19.55■□□□□ 0.72
USP39-201ENST00000323701 DPEP3Q9H4B8 488 aa19.55■□□□□ 0.72
USP39-201ENST00000323701 CHST12Q9NRB3 414 aa19.55■□□□□ 0.72
USP39-201ENST00000323701 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.55■□□□□ 0.72
USP39-201ENST00000323701 MICAL2O94851 1124 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms