RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PGM1P36871 562 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 ABCE1P61221 599 aaKnown RBP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 KYNUQ16719 465 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 KLHL40Q2TBA0 621 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 ZMYM1Q5SVZ6 1142 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 SLC9A4Q6AI14 798 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 SYCE2Q6PIF2 218 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 CENPUQ71F23 418 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 RRAGAQ7L523 313 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 ARMC5Q96C12 935 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 ELMO2Q96JJ3 720 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 DNAJC1Q96KC8 554 aaKnown RBP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 SPOCK3Q9BQ16 436 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 NLRC4Q9NPP4 1024 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 CFAP97Q9P2B7 532 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 PNMA8BQ9ULN7 279 aaPredicted RBP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 SOS1Q07889 1333 aaPredicted RBP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 F5H423 210 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 PTPN9P43378 593 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 BIDP55957 195 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 RAB30Q15771 203 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 BMP2KLQ5H9B9 411 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 GARNL3Q5VVW2 1013 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 FSTL5Q8N475 847 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 LRRC71Q8N4P6 559 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 COQ8AQ8NI60 647 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 MAGEB10Q96LZ2 347 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 NT5C3AQ9H0P0 336 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 ANKZF1Q9H8Y5 726 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 EFCAB1Q9HAE3 211 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 ELL3Q9HB65 397 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 STOX2Q9P2F5 926 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 LEF1Q9UJU2 399 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 STX8Q9UNK0 236 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 KANSL1LA0AUZ9 987 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 IFIT1P09914 478 aaKnown RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 C2orf54Q08AI8 447 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 MAP4K2Q12851 820 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 DCAF4L1Q3SXM0 396 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 PHC2Q8IXK0 858 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 KCNG4Q8TDN1 519 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 NACC2Q96BF6 587 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 ZDHHC12Q96GR4 267 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 PPP1R13BQ96KQ4 1090 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 GCOM2Q9BZD3 368 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 RNF41Q9H4P4 317 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 LRPPRCP42704 1394 aaKnown RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 KAT6BQ8WYB5 2073 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 GTPBP6O43824 516 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 PSMB9P28065 219 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 FABP6P51161 128 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 CACNB3P54284 484 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 LSM3P62310 102 aaKnown RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 ALCAMQ13740 583 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 ATPAF1Q5TC12 328 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 C12orf60Q5U649 245 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 BICRALQ6AI39 1079 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 PADI6Q6TGC4 694 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 FAM196AQ6ZSG2 479 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 CEP97Q8IW35 865 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 PDCD6IPQ8WUM4 868 aaKnown RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 RNPC3Q96LT9 517 aaKnown RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 MYRFLQ96LU7 910 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 TCEANC2Q96MN5 208 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 KCNK16Q96T55 309 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 GNG8Q9UK08 70 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 PADI2Q9Y2J8 665 aa7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 MRPS7Q9Y2R9 242 aaKnown RBP7.96□□□□□ -1.14
LIMCH1-201ENST00000313860 LOC110117498-PIK3R3F6TDL0 507 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 USP12O75317 370 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CSN2P05814 226 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 MYL3P08590 195 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 FCGR1AP12314 374 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 DARSP14868 501 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 PPP2R1AP30153 589 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 PRIM2P49643 509 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CCT8P50990 548 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 GSTA3Q16772 222 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 TWISTNBQ3B726 338 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 SPDYAQ5MJ70 313 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 MIS18BP1Q6P0N0 1132 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 BORAQ6PGQ7 559 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 OR7G1Q8NGA0 311 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 NSMCE2Q96MF7 247 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 PRR12Q9ULL5 1215 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 MYOM3Q5VTT5 1437 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF705FA8MVS1 300 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 HSBP1L1C9JCN9 74 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 NOL4O94818 638 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 SERPINA1P01009 418 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF705DP0CH99 300 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF705BP0CI00 300 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 ZSCAN22P10073 491 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 RASA1P20936 1047 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 PTPN12Q05209 780 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CDKL4Q5MAI5 379 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF425Q6IV72 752 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 FAM122CQ6P4D5 195 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 DARS2Q6PI48 645 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms