RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 RNF225M0QZC1 329 aaPredicted RBP19.44■□□□□ 0.7
HMGA1-201ENST00000311487 M0QZQ0 153 aa19.44■□□□□ 0.7
HMGA1-201ENST00000311487 TRAPPC3O43617 180 aa19.44■□□□□ 0.7
HMGA1-201ENST00000311487 OR4Q2P0C623 313 aa19.44■□□□□ 0.7
HMGA1-201ENST00000311487 USP8P40818 1118 aa19.44■□□□□ 0.7
HMGA1-201ENST00000311487 ARPP19P56211 112 aa19.44■□□□□ 0.7
HMGA1-201ENST00000311487 CCDC186Q7Z3E2 898 aa19.44■□□□□ 0.7
HMGA1-201ENST00000311487 DDX53Q86TM3 631 aaKnown RBP19.44■□□□□ 0.7
HMGA1-201ENST00000311487 NEK11Q8NG66 645 aa19.44■□□□□ 0.7
HMGA1-201ENST00000311487 PKNOX2Q96KN3 472 aa19.44■□□□□ 0.7
HMGA1-201ENST00000311487 TTYH1Q9H313 450 aaPredicted RBP19.44■□□□□ 0.7
HMGA1-201ENST00000311487 ACP6Q9NPH0 428 aa19.44■□□□□ 0.7
HMGA1-201ENST00000311487 GDAP2Q9NXN4 497 aa19.44■□□□□ 0.7
HMGA1-201ENST00000311487 VWA8A3KMH1 1905 aa19.44■□□□□ 0.7
HMGA1-201ENST00000311487 CBFA2T2O43439 604 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 ATP2C2O75185 946 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 ODC1P11926 461 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 UCHL3P15374 230 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 TRIM21P19474 475 aaKnown RBP19.43■□□□□ 0.7
HMGA1-201ENST00000311487 PPM1AP35813 382 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 CAMK1Q14012 370 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 VARS2Q5ST30 1063 aaKnown RBP19.43■□□□□ 0.7
HMGA1-201ENST00000311487 PLPP4Q5VZY2 271 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 RSPO2Q6UXX9 243 aaPredicted RBP19.43■□□□□ 0.7
HMGA1-201ENST00000311487 TMC7Q7Z402 723 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 TAF4BQ92750 862 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 TCF25Q9BQ70 676 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 TTPALQ9BTX7 342 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 DPEP3Q9H4B8 488 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 SSTR3P32745 418 aaPredicted RBP19.43■□□□□ 0.7
HMGA1-201ENST00000311487 PBX1P40424 430 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 PSMC1P62191 440 aaKnown RBP19.43■□□□□ 0.7
HMGA1-201ENST00000311487 USP41Q3LFD5 358 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 OVOS1Q6IE37 1185 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 DPH6Q7L8W6 267 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 TMC6Q7Z403 805 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 TWNKQ96RR1 684 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 C11orf84Q9BUA3 381 aaPredicted RBP19.43■□□□□ 0.7
HMGA1-201ENST00000311487 GANQ9H2C0 597 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 VRTNQ9H8Y1 702 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 ENTPD7Q9NQZ7 604 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 CISHQ9NSE2 258 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 PCDHB8Q9UN66 801 aa19.43■□□□□ 0.7
HMGA1-201ENST00000311487 HIDE1A8MVS5 230 aa19.42■□□□□ 0.7
HMGA1-201ENST00000311487 EFEMP2O95967 443 aa19.42■□□□□ 0.7
HMGA1-201ENST00000311487 SOD2P04179 222 aa19.42■□□□□ 0.7
HMGA1-201ENST00000311487 PLCB3Q01970 1234 aa19.42■□□□□ 0.7
HMGA1-201ENST00000311487 YWHAHQ04917 246 aaPredicted RBP19.42■□□□□ 0.7
HMGA1-201ENST00000311487 KIAA0319Q5VV43 1072 aa19.42■□□□□ 0.7
HMGA1-201ENST00000311487 RTP3Q9BQQ7 232 aa19.42■□□□□ 0.7
HMGA1-201ENST00000311487 BCO2Q9BYV7 579 aa19.42■□□□□ 0.7
HMGA1-201ENST00000311487 PRDM12Q9H4Q4 367 aa19.42■□□□□ 0.7
HMGA1-201ENST00000311487 DDX43Q9NXZ2 648 aaKnown RBP19.42■□□□□ 0.7
HMGA1-201ENST00000311487 RWDD3Q9Y3V2 267 aa19.42■□□□□ 0.7
HMGA1-201ENST00000311487 PRUNE2Q8WUY3 3088 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 C5orf67F2Z3F1 127 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 H3BNC9 293 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 ADAM12O43184 909 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 STAU1O95793 577 aaKnown RBP19.41■□□□□ 0.7
HMGA1-201ENST00000311487 KRT5P13647 590 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 P4HA1P13674 534 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 FGFR3P22607 806 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 GNL1P36915 607 aaPredicted RBP19.41■□□□□ 0.7
HMGA1-201ENST00000311487 NDST1P52848 882 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 ARID5AQ03989 594 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 GRIN2CQ14957 1233 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 TMEM270Q6UE05 265 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 Q7L0L9 218 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 OR10T2Q8NGX3 314 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 PLVAPQ9BX97 442 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 SNX25Q9H3E2 840 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 PUF60Q9UHX1 559 aaKnown RBP19.41■□□□□ 0.7
HMGA1-201ENST00000311487 PCDHB4Q9Y5E5 795 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 SPTBN5Q9NRC6 3674 aaKnown RBP19.41■□□□□ 0.7
HMGA1-201ENST00000311487 A0A1W2PPC1 479 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 A8MXQ7 604 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 FOXN3O00409 490 aaPredicted RBP19.41■□□□□ 0.7
HMGA1-201ENST00000311487 CXCL14O95715 111 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 DRAP1Q14919 205 aaPredicted RBP19.41■□□□□ 0.7
HMGA1-201ENST00000311487 CTXN3Q4LDR2 81 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 RBM23Q86U06 439 aaKnown RBP19.41■□□□□ 0.7
HMGA1-201ENST00000311487 VSTM4Q8IW00 320 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 RNF168Q8IYW5 571 aaPredicted RBP19.41■□□□□ 0.7
HMGA1-201ENST00000311487 TOP6BLQ8N6T0 577 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 LNX1Q8TBB1 728 aaPredicted RBP19.41■□□□□ 0.7
HMGA1-201ENST00000311487 CHST7Q9NS84 486 aa19.41■□□□□ 0.7
HMGA1-201ENST00000311487 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.41■□□□□ 0.7
HMGA1-201ENST00000311487 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.4■□□□□ 0.7
HMGA1-201ENST00000311487 A0A1W2PQC6 194 aa19.4■□□□□ 0.7
HMGA1-201ENST00000311487 GLUD2P49448 558 aa19.4■□□□□ 0.7
HMGA1-201ENST00000311487 MFAP3P55082 362 aa19.4■□□□□ 0.7
HMGA1-201ENST00000311487 ACOT1Q86TX2 421 aa19.4■□□□□ 0.7
HMGA1-201ENST00000311487 METTL23Q86XA0 190 aa19.4■□□□□ 0.7
HMGA1-201ENST00000311487 C12orf29Q8N999 325 aa19.4■□□□□ 0.7
HMGA1-201ENST00000311487 WHAMMQ8TF30 809 aa19.4■□□□□ 0.7
HMGA1-201ENST00000311487 GPR88Q9GZN0 384 aa19.4■□□□□ 0.7
HMGA1-201ENST00000311487 ZBP1Q9H171 429 aa19.4■□□□□ 0.7
HMGA1-201ENST00000311487 TLR9Q9NR96 1032 aa19.4■□□□□ 0.7
HMGA1-201ENST00000311487 PYCARDQ9ULZ3 195 aa19.4■□□□□ 0.7
HMGA1-201ENST00000311487 PER2O15055 1255 aa19.39■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms