RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 KLHL23Q8NBE8 558 aa5.48□□□□□ -1.53
SCN1A-201ENST00000303395 AFG1LQ8WV93 481 aa5.48□□□□□ -1.53
SCN1A-201ENST00000303395 MRPL1Q9BYD6 325 aaKnown RBP5.48□□□□□ -1.53
SCN1A-201ENST00000303395 EPB41L1Q9H4G0 881 aa5.48□□□□□ -1.53
SCN1A-201ENST00000303395 RPAP3Q9H6T3 665 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-201ENST00000303395 XDHP47989 1333 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 OPLAHO14841 1288 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 DDHD2O94830 711 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 WDR47O94967 919 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 GCNT3O95395 438 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 KRT75O95678 551 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 UBTFL6P0CB48 400 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 MMP13P45452 471 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 TCEAL1Q15170 157 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 DCAF15Q66K64 600 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 RBM12BQ8IXT5 1001 aaKnown RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ULK2Q8IYT8 1036 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 METTL13Q8N6R0 699 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ASZ1Q8WWH4 475 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 WDR24Q96S15 920 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 TRABDQ9H4I3 376 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ZNF408Q9H9D4 720 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 PARVAQ9NVD7 372 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 CYP39A1Q9NYL5 469 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 MAP10Q9P2G4 905 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 KLRF2D3W0D1 207 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 C2CD2LO14523 706 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 MGRN1O60291 552 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 CCNB2O95067 398 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 POLR2MP0CAP2 368 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 TMOD1P28289 359 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 CCNG1P51959 295 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 RAD23AP54725 363 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 CCNG2Q16589 344 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 BOLA3Q53S33 107 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 TRIM65Q6PJ69 517 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 RASSF3Q86WH2 238 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 TPCN2Q8NHX9 752 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 OTUD7AQ8TE49 926 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 SETDB2Q96T68 719 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 PIGUQ9H490 435 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 MCM8Q9UJA3 840 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 RAB26Q9ULW5 256 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 FAM205AQ6ZU69 1335 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 RP1L1Q8IWN7 2480 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 IRGMA1A4Y4 181 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 SFI1A8K8P3 1242 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 NEMP1O14524 444 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 CNOT3O75175 753 aaKnown RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 GLRA3O75311 464 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 PDAP1Q13442 181 aaKnown RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 CBFBQ13951 182 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 PDK2Q15119 407 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 MROH9Q5TGP6 573 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 CCDC137Q6PK04 289 aaKnown RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 LVRNQ6Q4G3 990 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ZDHHC17Q8IUH5 632 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 MYCT1Q8N699 235 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 TSSK1BQ9BXA7 367 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 UNKQ9C0B0 810 aaKnown RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 CD320Q9NPF0 282 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 STAP1Q9ULZ2 295 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ATP11BQ9Y2G3 1177 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 FAM47E-STBD1D6RA91 191 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 IFRD1O00458 451 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 LRRN2O75325 713 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 PDE9AO76083 593 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ATP6V1G2O95670 118 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 NR3C1P04150 777 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 CD19P15391 556 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 TIGD7Q6NT04 549 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 LRRC49Q8IUZ0 686 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 C12orf50Q8NA57 414 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ZNF555Q8NEP9 628 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ENKURQ8TC29 256 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 BORCS5Q969J3 196 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 BTBD6Q96KE9 485 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 RIT2Q99578 217 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 MKS1Q9NXB0 559 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 DRG1Q9Y295 367 aaKnown RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 USTQ9Y2C2 406 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ZNF711Q9Y462 761 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 FLT1P17948 1338 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 PRMT3O60678 531 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 BBOX1O75936 387 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 VCPP55072 806 aaKnown RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 BNIP2Q12982 314 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 RGS21Q2M5E4 152 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 JAMLQ86YT9 394 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 RDH13Q8NBN7 331 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 USP13Q92995 863 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ZSWIM1Q9BR11 485 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 NEUROD4Q9HD90 331 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 MOSPD1Q9UJG1 213 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 DMTF1Q9Y222 760 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 CLIC4Q9Y696 253 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 TMEM114B3SHH9 223 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 GYPCP04921 128 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ABCB1P08183 1280 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-201ENST00000303395 NPY2RP49146 381 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms