RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PAPPA2Q9BXP8 1791 aa19.44■□□□□ 0.7
SHKBP1-201ENST00000291842 CREB1P16220 341 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 AP3M2P53677 418 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 TTC31Q49AM3 519 aaPredicted RBP19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 ATF7IP2Q5U623 682 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 SYDE1Q6ZW31 735 aaPredicted RBP19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 EXOC3L1Q86VI1 746 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 IPO4Q8TEX9 1081 aaKnown RBP19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 ATXN2LQ8WWM7 1075 aaKnown RBP19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 CHMP6Q96FZ7 201 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 TMEM109Q9BVC6 243 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 OTOFQ9HC10 1997 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 IQCF3P0C7M6 154 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 ZSCAN5DPP0CG00 497 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 CXCL8P10145 99 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 DRD4P21917 467 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 IREB2P48200 963 aaKnown RBP19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 CDH8P55286 799 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 GJC2Q5T442 439 aaPredicted RBP19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 IZUMO3Q5VZ72 239 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 EFCAB12Q6NXP0 572 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 MPZL3Q6UWV2 235 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 TMEM35BQ8NCS4 154 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 KAT2BQ92831 832 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 FHDC1Q9C0D6 1143 aaPredicted RBP19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 INTS9Q9NV88 658 aaKnown RBP19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 DNPEPQ9ULA0 475 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 CAPN7Q9Y6W3 813 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 A0A0G2JMZ2 1700 aa19.43■□□□□ 0.7
SHKBP1-201ENST00000291842 IGKV6-21A0A0C4DH24 114 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 GOLGA8SH3BPF8 625 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 TTC4O95801 387 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 CALB1P05937 261 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 ETS1P14921 441 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 CD19P15391 556 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 PSMC4P43686 418 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 ASPAP45381 313 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 C6orf89Q6UWU4 347 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 ERICH1Q86X53 443 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 MGARPQ8TDB4 240 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 CABS1Q96KC9 395 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 C9orf72Q96LT7 481 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 SLITRK1Q96PX8 696 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 MMP19Q99542 508 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 XYLT2Q9H1B5 865 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 TMEM51Q9NW97 253 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 LGR5O75473 907 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 TXNP10599 105 aaKnown RBP19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 KCTD2Q14681 263 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 LRRC14Q15048 493 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 P3H1Q32P28 736 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 DENND1BQ6P3S1 775 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 JPH2Q9BR39 696 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 RNPEPQ9H4A4 650 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 HOMER3Q9NSC5 361 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 NINJ2Q9NZG7 142 aa19.42■□□□□ 0.7
SHKBP1-201ENST00000291842 TCRBV5S1A1TA0A578 114 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 GRM1Q13255 1194 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 TNFAIP8L3Q5GJ75 292 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 FBXW10Q5XX13 1052 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 TSHZ1Q6ZSZ6 1077 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 CENPTQ96BT3 561 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 PTPRHQ9HD43 1115 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 ADARB2Q9NS39 739 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 TBK1Q9UHD2 729 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 ZNF148Q9UQR1 794 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 ACKR2O00590 384 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 TNNC2P02585 160 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 LACTBP83111 547 aaPredicted RBP19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 HP1BP3Q5SSJ5 553 aaPredicted RBP19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 PLPPR4Q7Z2D5 763 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 ERO1BQ86YB8 467 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 RCOR2Q8IZ40 523 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 CACNA2D3Q8IZS8 1091 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 CCDC89Q8N998 374 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 ARHGEF2Q92974 986 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 ZNF317Q96PQ6 595 aaPredicted RBP19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 C2orf40Q9H1Z8 148 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 MLXIPLQ9NP71 852 aa19.41■□□□□ 0.7
SHKBP1-201ENST00000291842 EVPLQ92817 2033 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 C5orf60A6NFR6 353 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 LIASO43766 372 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 LSM8O95777 96 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 ITGBL1O95965 494 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 PROZP22891 400 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 KLRC2P26717 231 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 SPRED3Q2MJR0 410 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 WDR72Q3MJ13 1102 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 GKAP1Q5VSY0 366 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 CCDC62Q6P9F0 684 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 CROCCP2Q86T23 111 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 ANKRD36BP1Q96IX9 119 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 ROPN1BQ9BZX4 212 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 ROPN1Q9HAT0 212 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 CYTH4Q9UIA0 394 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 LRRC37A2A6NM11 1700 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 ATXN2Q99700 1313 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 LRRD1A4D1F6 860 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 SLC25A27O95847 323 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 NFICP08651 508 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms