RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 CDH5P33151 784 aaPredicted RBP15.02■□□□□ -0
SS18-201ENST00000269137 NSFP46459 744 aaKnown RBP15.02■□□□□ -0
SS18-201ENST00000269137 LILRA4P59901 499 aa15.02■□□□□ -0
SS18-201ENST00000269137 GPNMBQ14956 572 aa15.02■□□□□ -0
SS18-201ENST00000269137 SLFN11Q7Z7L1 901 aa15.02■□□□□ -0
SS18-201ENST00000269137 PHF13Q86YI8 300 aaPredicted RBP15.02■□□□□ -0
SS18-201ENST00000269137 TRIM11Q96F44 468 aa15.02■□□□□ -0
SS18-201ENST00000269137 TWNKQ96RR1 684 aa15.02■□□□□ -0
SS18-201ENST00000269137 GOLGA2P5Q9HBQ8 144 aa15.02■□□□□ -0
SS18-201ENST00000269137 DYNC1I1O14576 645 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 ENC1O14682 589 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 SPTLC1O15269 473 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 NBNO60934 754 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 PRLRP16471 622 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 AFF1P51825 1210 aaKnown RBP15.01□□□□□ -0.01
SS18-201ENST00000269137 NDST1P52848 882 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 NAA35Q5VZE5 725 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 DPH6Q7L8W6 267 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 UNC93AQ86WB7 457 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 MCOLN2Q8IZK6 566 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 ANKLE1Q8NAG6 615 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 LINC01599Q8WXQ3 324 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 CPA5Q8WXQ8 436 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 NT5C1AQ9BXI3 368 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 LHX5Q9H2C1 402 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 AVENQ9NQS1 362 aaPredicted RBP15.01□□□□□ -0.01
SS18-201ENST00000269137 HMGXB4Q9UGU5 601 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 KIAA0100Q14667 2235 aaKnown RBP15.01□□□□□ -0.01
SS18-201ENST00000269137 DCDC2CA8MYV0 355 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 PARNO95453 639 aaKnown RBP15.01□□□□□ -0.01
SS18-201ENST00000269137 VDRP11473 427 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 CD19P15391 556 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 GJA8P48165 433 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 SCNN1GP51170 649 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 ATN1P54259 1190 aaPredicted RBP15.01□□□□□ -0.01
SS18-201ENST00000269137 SOWAHAQ2M3V2 549 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 PLEKHG4Q58EX7 1191 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 MON1BQ7L1V2 547 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 SYCE1Q8N0S2 351 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 RNF169Q8NCN4 708 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 TMEM35BQ8NCS4 154 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 MRPL45Q9BRJ2 306 aaKnown RBP15.01□□□□□ -0.01
SS18-201ENST00000269137 OSGEPQ9NPF4 335 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 UVRAGQ9P2Y5 699 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 SAR1BQ9Y6B6 198 aa15.01□□□□□ -0.01
SS18-201ENST00000269137 SLU7O95391 586 aaKnown RBP15□□□□□ -0.01
SS18-201ENST00000269137 GTF2F1P35269 517 aaKnown RBP eCLIP15□□□□□ -0.01
SS18-201ENST00000269137 CTCFP49711 727 aaPredicted RBP15□□□□□ -0.01
SS18-201ENST00000269137 LBX1P52954 281 aa15□□□□□ -0.01
SS18-201ENST00000269137 TLE2Q04725 743 aa15□□□□□ -0.01
SS18-201ENST00000269137 C1QBPQ07021 282 aaKnown RBP15□□□□□ -0.01
SS18-201ENST00000269137 GRIK3Q13003 919 aa15□□□□□ -0.01
SS18-201ENST00000269137 CNGA2Q16280 664 aa15□□□□□ -0.01
SS18-201ENST00000269137 MEI1Q5TIA1 1274 aa15□□□□□ -0.01
SS18-201ENST00000269137 PASD1Q8IV76 773 aa15□□□□□ -0.01
SS18-201ENST00000269137 TOP6BLQ8N6T0 577 aa15□□□□□ -0.01
SS18-201ENST00000269137 APBB2Q92870 758 aa15□□□□□ -0.01
SS18-201ENST00000269137 ZNF653Q96CK0 615 aa15□□□□□ -0.01
SS18-201ENST00000269137 TLR10Q9BXR5 811 aa15□□□□□ -0.01
SS18-201ENST00000269137 CTTNBP2NLQ9P2B4 639 aa15□□□□□ -0.01
SS18-201ENST00000269137 SNX12Q9UMY4 172 aa15□□□□□ -0.01
SS18-201ENST00000269137 COG5Q9UP83 839 aa15□□□□□ -0.01
SS18-201ENST00000269137 CEP83Q9Y592 693 aa15□□□□□ -0.01
SS18-201ENST00000269137 CAPN2P17655 700 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 PAX3P23760 479 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 FAAP100Q0VG06 881 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 STILQ15468 1287 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 WHAMMP3Q1A5X7 153 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 APPL2Q8NEU8 664 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 UBE2Q2Q8WVN8 375 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 KBTBD7Q8WVZ9 684 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 SEPT8Q92599 483 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 DDX27Q96GQ7 796 aaKnown RBP14.99□□□□□ -0.01
SS18-201ENST00000269137 HEXIM2Q96MH2 286 aaKnown RBP14.99□□□□□ -0.01
SS18-201ENST00000269137 ABCB6Q9NP58 842 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 ADAM22Q9P0K1 906 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 CNOT8Q9UFF9 292 aaKnown RBP14.99□□□□□ -0.01
SS18-201ENST00000269137 O00370 1275 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 PODXLO00592 558 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 BUB1BO60566 1050 aaPredicted RBP14.99□□□□□ -0.01
SS18-201ENST00000269137 HUS1O60921 280 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 CXCL10P02778 98 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 MMP8P22894 467 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 PTP4A2Q12974 167 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 UPP1Q16831 310 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 SGO2Q562F6 1265 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 LIN9Q5TKA1 542 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 GLB1LQ6UWU2 654 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 WDTC1Q8N5D0 677 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 DBF4BQ8NFT6 615 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 TET1Q8NFU7 2136 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 DNAI2Q9GZS0 605 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 HIPK3Q9H422 1215 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 ELAC1Q9H777 363 aaKnown RBP14.99□□□□□ -0.01
SS18-201ENST00000269137 L1RE1Q9UN81 338 aa14.99□□□□□ -0.01
SS18-201ENST00000269137 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.99□□□□□ -0.01
SS18-201ENST00000269137 TDRD15B5MCY1 1934 aaKnown RBP14.98□□□□□ -0.01
SS18-201ENST00000269137 ENPP3O14638 875 aa14.98□□□□□ -0.01
SS18-201ENST00000269137 FTCDO95954 541 aa14.98□□□□□ -0.01
SS18-201ENST00000269137 TCP1P17987 556 aaKnown RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms