RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SPOPO43791 374 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 PAN2Q504Q3 1202 aaKnown RBP17.54■□□□□ 0.4
USP4-201ENST00000265560 GSPT2Q8IYD1 628 aaKnown RBP17.54■□□□□ 0.4
USP4-201ENST00000265560 ABCB6Q9NP58 842 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 FAM105AQ9NUU6 356 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 GOLGA8SH3BPF8 625 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 PTGESO14684 152 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 TLR3O15455 904 aaKnown RBP17.54■□□□□ 0.4
USP4-201ENST00000265560 CILPO75339 1184 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 ITGA4P13612 1032 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 VSNL1P62760 191 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 KYAT1Q16773 422 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 CFAP221Q4G0U5 840 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 ZNF677Q86XU0 584 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 BEST2Q8NFU1 509 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 HES6Q96HZ4 224 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 PAAF1Q9BRP4 392 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 DPEP3Q9H4B8 488 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 ST7Q9NRC1 585 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 THSD7BQ9C0I4 1608 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 PRLRP16471 622 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 SSR1P43307 286 aaKnown RBP17.53■□□□□ 0.4
USP4-201ENST00000265560 CKAP4Q07065 602 aaKnown RBP17.53■□□□□ 0.4
USP4-201ENST00000265560 MYO1EQ12965 1108 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 REM2Q8IYK8 340 aaPredicted RBP17.53■□□□□ 0.4
USP4-201ENST00000265560 SYCE1Q8N0S2 351 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 GPR161Q8N6U8 529 aaKnown RBP17.53■□□□□ 0.4
USP4-201ENST00000265560 UNC93B1Q9H1C4 597 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 CNTN3Q9P232 1028 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 INPP5FQ9Y2H2 1132 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 LMO2P25791 158 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 AXLP30530 894 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 PTPN11Q06124 597 aaPredicted RBP17.53■□□□□ 0.4
USP4-201ENST00000265560 APBB1IPQ7Z5R6 666 aaPredicted RBP17.53■□□□□ 0.4
USP4-201ENST00000265560 OR6B3Q8NGW1 331 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 TMEM176AQ96HP8 235 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 PLEKHA5Q9HAU0 1116 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 ZNF446Q9NWS9 450 aa17.53■□□□□ 0.4
USP4-201ENST00000265560 A0A1W2PQ45 241 aaPredicted RBP17.52■□□□□ 0.4
USP4-201ENST00000265560 A0A1W2PQY0 241 aa17.52■□□□□ 0.4
USP4-201ENST00000265560 ZSCAN5CA6NGD5 496 aaPredicted RBP17.52■□□□□ 0.4
USP4-201ENST00000265560 DDX3YO15523 660 aaKnown RBP17.52■□□□□ 0.4
USP4-201ENST00000265560 POMCP01189 267 aa17.52■□□□□ 0.4
USP4-201ENST00000265560 LPIN1Q14693 890 aa17.52■□□□□ 0.4
USP4-201ENST00000265560 KRT12Q99456 494 aa17.52■□□□□ 0.4
USP4-201ENST00000265560 STARD7Q9NQZ5 370 aa17.52■□□□□ 0.4
USP4-201ENST00000265560 DMGDHQ9UI17 866 aaKnown RBP17.52■□□□□ 0.4
USP4-201ENST00000265560 TIMM13Q9Y5L4 95 aaPredicted RBP17.52■□□□□ 0.4
USP4-201ENST00000265560 TET1Q8NFU7 2136 aa17.52■□□□□ 0.4
USP4-201ENST00000265560 MGAT3Q09327 533 aa17.52■□□□□ 0.4
USP4-201ENST00000265560 MAMLD1Q13495 774 aa17.52■□□□□ 0.4
USP4-201ENST00000265560 FBXO47Q5MNV8 452 aa17.52■□□□□ 0.4
USP4-201ENST00000265560 GSTCDQ8NEC7 633 aa17.52■□□□□ 0.4
USP4-201ENST00000265560 ADAM2Q99965 735 aa17.52■□□□□ 0.4
USP4-201ENST00000265560 M0QYV0 167 aa17.52■□□□□ 0.39
USP4-201ENST00000265560 TULP2O00295 520 aa17.52■□□□□ 0.39
USP4-201ENST00000265560 FGGP02679 453 aa17.52■□□□□ 0.39
USP4-201ENST00000265560 CYP3A5P20815 502 aa17.52■□□□□ 0.39
USP4-201ENST00000265560 SCNN1GP51170 649 aa17.52■□□□□ 0.39
USP4-201ENST00000265560 SOWAHAQ2M3V2 549 aa17.52■□□□□ 0.39
USP4-201ENST00000265560 PXYLP1Q8TE99 480 aa17.52■□□□□ 0.39
USP4-201ENST00000265560 CASTOR2A6NHX0 329 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 I3L4J1 428 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 TCF4P15884 667 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 ATICP31939 592 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 RGS7P49802 495 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 ATN1P54259 1190 aaPredicted RBP17.51■□□□□ 0.39
USP4-201ENST00000265560 PTP4A2Q12974 167 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 PAK2Q13177 524 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 PTPN20Q4JDL3 420 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 ERICH1Q86X53 443 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 HASPINQ8TF76 798 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 DEFB118Q96PH6 123 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 KLHL11Q9NVR0 708 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 UBQLN1Q9UMX0 589 aaKnown RBP17.51■□□□□ 0.39
USP4-201ENST00000265560 ESYT3A0FGR9 886 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 FGFR1P11362 822 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 P4HA1P13674 534 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 H2AFXP16104 143 aaPredicted RBP17.51■□□□□ 0.39
USP4-201ENST00000265560 CST5P28325 142 aaPredicted RBP17.51■□□□□ 0.39
USP4-201ENST00000265560 TRADDQ15628 312 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 TMEM35BQ8NCS4 154 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 ACSF2Q96CM8 615 aaPredicted RBP17.51■□□□□ 0.39
USP4-201ENST00000265560 CPXM1Q96SM3 734 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 CFHR5Q9BXR6 569 aa17.51■□□□□ 0.39
USP4-201ENST00000265560 DDX47Q9H0S4 455 aaKnown RBP17.51■□□□□ 0.39
USP4-201ENST00000265560 BARX2Q9UMQ3 279 aaPredicted RBP17.51■□□□□ 0.39
USP4-201ENST00000265560 MYO1FO00160 1098 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 MICAL2O94851 1124 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 MMP8P22894 467 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 ACAT1P24752 427 aaKnown RBP17.5■□□□□ 0.39
USP4-201ENST00000265560 AGMOQ6ZNB7 445 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 CD302Q8IX05 232 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 MCEEQ96PE7 176 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 SPDYE4A6NLX3 237 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 MBTPS1Q14703 1052 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 EMC1Q8N766 993 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 SYNCQ9H7C4 482 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 TCRBV7S2A1N4TA0A589 114 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 ARL5CA6NH57 179 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms