RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 B4GALT5O43286 388 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 SUN1O94901 812 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 POTEJP0CG39 1038 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 GBP1P32455 592 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 NCALDP61601 193 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 CAPSQ13938 189 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 XKR3Q5GH77 459 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 CA4P22748 312 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 RPA3P35244 121 aaPredicted RBP22.52■■□□□ 1.2
TRIM28-201ENST00000253024 ANKRD22Q5VYY1 191 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 RNF149Q8NC42 400 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 JOSD2Q8TAC2 188 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 HSPH1Q92598 858 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 N4BP2L2Q92802 583 aaPredicted RBP22.52■■□□□ 1.2
TRIM28-201ENST00000253024 GPRASP2Q96D09 838 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 SENP7Q9BQF6 1050 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 GGA2Q9UJY4 613 aa22.52■■□□□ 1.2
TRIM28-201ENST00000253024 F5H423 210 aaPredicted RBP22.51■■□□□ 1.19
TRIM28-201ENST00000253024 OATP04181 439 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 XRCC4Q13426 336 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 CCDC91Q7Z6B0 441 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 GIMAP7Q8NHV1 300 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 GRID1Q9ULK0 1009 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 KIAA1217Q5T5P2 1943 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 SRRM3A6NNA2 597 aaPredicted RBP22.51■■□□□ 1.19
TRIM28-201ENST00000253024 PGK2P07205 417 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 TARSP26639 723 aaKnown RBP22.51■■□□□ 1.19
TRIM28-201ENST00000253024 LACTB2Q53H82 288 aaPredicted RBP22.51■■□□□ 1.19
TRIM28-201ENST00000253024 SPDYCQ5MJ68 293 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 MFSD5Q6N075 450 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 SLITRK1Q96PX8 696 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 SYNCQ9H7C4 482 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 MRPL47Q9HD33 250 aaKnown RBP22.51■■□□□ 1.19
TRIM28-201ENST00000253024 PDLIM7Q9NR12 457 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 CISHQ9NSE2 258 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 DCTN4Q9UJW0 460 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 AFG3L2Q9Y4W6 797 aa22.51■■□□□ 1.19
TRIM28-201ENST00000253024 RFC1P35251 1148 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-201ENST00000253024 CDO1Q16878 200 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 NCAPG2Q86XI2 1143 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 LIASO43766 372 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 SLC1A1P43005 524 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 TRPC3Q13507 836 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 TCEAL1Q15170 157 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 CCNG2Q16589 344 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 GNPTABQ3T906 1256 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 RHPN2Q8IUC4 686 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 C3orf20Q8ND61 904 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 CKAP2Q8WWK9 683 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 TIPINQ9BVW5 301 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 ROPN1BQ9BZX4 212 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-201ENST00000253024 ROPN1Q9HAT0 212 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-201ENST00000253024 KIAA1586Q9HCI6 787 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 PARVAQ9NVD7 372 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 SLC12A4Q9UP95 1085 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 TCRBV7S3A2A0A539 114 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 INO80B-WBP1J3KQ70 363 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 CDH16O75309 829 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 IRX3P78415 501 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-201ENST00000253024 ZC3H18Q86VM9 953 aaKnown RBP22.5■■□□□ 1.19
TRIM28-201ENST00000253024 AGAP11Q8TF27 550 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 INO80BQ9C086 356 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-201ENST00000253024 TRABDQ9H4I3 376 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 ACAD9Q9H845 621 aa22.5■■□□□ 1.19
TRIM28-201ENST00000253024 AVENQ9NQS1 362 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-201ENST00000253024 PTP4A2Q12974 167 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 TNFAIP1Q13829 316 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 TFDP1Q14186 410 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 PLCB4Q15147 1175 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 WDR72Q3MJ13 1102 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 BBS9Q3SYG4 887 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 TNFAIP8L3Q5GJ75 292 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 DENND1BQ6P3S1 775 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 ECHDC2Q86YB7 292 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 ERP27Q96DN0 273 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 TEX13BQ9BXU2 312 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 CALN1Q9BXU9 219 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 PSMA2P25787 234 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 BPIFB4P59827 614 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 SLC1A5Q15758 541 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 ZNF568Q3ZCX4 644 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 MSS51Q4VC12 460 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 SH3PXD2AQ5TCZ1 1133 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 FKBP1CQ5VVH2 108 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 CCDC77Q9BR77 488 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 ETNK1Q9HBU6 452 aa22.49■■□□□ 1.19
TRIM28-201ENST00000253024 TAC1P20366 129 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 KLRC2P26717 231 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 ITIH4Q14624 930 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 TREML2Q5T2D2 321 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 FAXCQ5TGI0 409 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 NPNTQ6UXI9 565 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 SPOCD1Q6ZMY3 1216 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 ENOSF1Q7L5Y1 443 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 ERICH1Q86X53 443 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 PORCNQ9H237 461 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 HMGXB4Q9UGU5 601 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 CST8O60676 142 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 UPP2O95045 317 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 IL1R2P27930 398 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms