RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	SLC2A4RG	Q9NR83	387 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	SEL1L	Q9UBV2	794 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	EXOC7	Q9UPT5	735 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	SIT1	Q9Y3P8	196 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	MTF2	Q9Y483	593 aa	Predicted RBP	11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	STYXL1	Q9Y6J8	313 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	NOTCH4	Q99466	2003 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	ANO9	A1A5B4	782 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	OR6C75	A6NL08	312 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	GFRA3	O60609	400 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	POU2F2	P09086	479 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	CASP1	P29466	404 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	ABCD1	P33897	745 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	VIPR2	P41587	438 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	POSTN	Q15063	836 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	ANGPT1	Q15389	498 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	TEAD2	Q15562	447 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	SLC39A12	Q504Y0	691 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	WSCD1	Q658N2	575 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	SHC4	Q6S5L8	630 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	CCDC105	Q8IYK2	499 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	OR10T2	Q8NGX3	314 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	SNX21	Q969T3	373 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	CBWD1	Q9BRT8	395 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	SLITRK6	Q9H5Y7	841 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	ASB7	Q9H672	318 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	ASAH2	Q9NR71	780 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	GDE1	Q9NZC3	331 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	DERA	Q9Y315	318 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	YIPF1	Q9Y548	306 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	PCDHB13	Q9Y5F0	798 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141	MYO15A	Q9UKN7	3530 aa		11.13	□□□□□ -0.63
SCN1A-222	ENST00000642141		A0A1W2PRU2	124 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	ZNF197	O14709	1029 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	MOSPD3	O75425	235 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	ITGB3	P05106	788 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	ZSCAN22	P10073	491 aa	Predicted RBP	11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	GLUL	P15104	373 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	TYMP	P19971	482 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	ALDH1A3	P47895	512 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	NUBP1	P53384	320 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	EPHB3	P54753	998 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	ASIC1	P78348	528 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	GPR17	Q13304	367 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	UBXN2B	Q14CS0	331 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	MLF2	Q15773	248 aa	Predicted RBP	11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	STXBP5	Q5T5C0	1151 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	LMBRD2	Q68DH5	695 aa	Predicted RBP	11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	CENPP	Q6IPU0	288 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	ASCL5	Q7RTU5	278 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	LRRTM3	Q86VH5	581 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	METTL23	Q86XA0	190 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	CCDC65	Q8IXS2	484 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	CSGALNACT2	Q8N6G5	542 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	SHKBP1	Q8TBC3	707 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	FAM200A	Q8TCP9	573 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	GIPC2	Q8TF65	315 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	HVCN1	Q96D96	273 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	CHAMP1	Q96JM3	812 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	TSPAN18	Q96SJ8	248 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	SEPT5	Q99719	369 aa	Predicted RBP	11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	IRF2BPL	Q9H1B7	796 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	BLZF1	Q9H2G9	400 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	PDE11A	Q9HCR9	933 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	ZNF334	Q9HCZ1	680 aa	Predicted RBP	11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	HEBP1	Q9NRV9	189 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	RBAK	Q9NYW8	714 aa	Predicted RBP	11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	AGAP1	Q9UPQ3	857 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	C2CD2	Q9Y426	696 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	PDCD11	Q14690	1871 aa	Known RBP	11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	DMD	P11532	3685 aa		11.12	□□□□□ -0.63
SCN1A-222	ENST00000642141	PIEZO1	Q92508	2521 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	FRMD3	A2A2Y4	597 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	MTMR11	A4FU01	709 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	FAM170B	A6NMN3	283 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	KPNA7	A9QM74	516 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	POLR2D	O15514	142 aa	Known RBP	11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	CUTA	O60888	179 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	PPP6R2	O75170	966 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	ECI2	O75521	394 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	IL18RAP	O95256	599 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	KRT19	P08727	400 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	FCAR	P24071	287 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	POLR2B	P30876	1174 aa	Known RBP	11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	HOXD13	P35453	343 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	ME1	P48163	572 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	TAF6	P49848	677 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	STARD6	P59095	220 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	BFSP1	Q12934	665 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	E2F4	Q16254	413 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	MGAT5B	Q3V5L5	792 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	PHLDB3	Q6NSJ2	640 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	TPRG1	Q6ZUI0	275 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	GRAMD1C	Q8IYS0	662 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	RDH13	Q8NBN7	331 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	PJA1	Q8NG27	643 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	ELSPBP1	Q96BH3	223 aa		11.11	□□□□□ -0.63

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