RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 EPS8L1Q8TE68 723 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 SGK3Q96BR1 496 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 STAMBPL1Q96FJ0 436 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 COG3Q96JB2 828 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 REV1Q9UBZ9 1251 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TMCO1Q9UM00 188 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 FHOD1Q9Y613 1164 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF462Q96JM2 2506 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TRAV6A0A075B6T7 132 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 DTNBO60941 627 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 RTN2O75298 545 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 SH3BGRLO75368 114 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 CRTAPO75718 401 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 SMNDC1O75940 238 aaKnown RBP eCLIP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 GOSR1O95249 250 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 RGS19P49795 217 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 AFF3P51826 1226 aaKnown RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ARHGDIBP52566 201 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 IL1RL1Q01638 556 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 STK4Q13043 487 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 CTTNQ14247 550 aaKnown RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TTC23LQ6PF05 361 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 CCBE1Q6UXH8 406 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF600Q6ZNG1 722 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 RNF135Q8IUD6 432 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 CLEC4FQ8N1N0 589 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF596Q8TC21 504 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 GTF3C2Q8WUA4 911 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 HNRNPABQ99729 332 aaKnown RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 KLHL20Q9Y2M5 609 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TRAV20A0A0B4J274 112 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ZSCAN5CA6NGD5 496 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 LILRB3O75022 631 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 CHN1P15882 459 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 GSTT1P30711 240 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 RFC4P35249 363 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ADCK1Q86TW2 530 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ANKMY2Q8IV38 441 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 RFT1Q96AA3 541 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 MCRS1Q96EZ8 462 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 SNX27Q96L92 541 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 GMLQ99445 158 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 APBA2Q99767 749 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ZSCAN5AQ9BUG6 496 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 FAM105AQ9NUU6 356 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 SERPINB13Q9UIV8 391 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 CORO1CQ9ULV4 474 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TDRKHQ9Y2W6 561 aaKnown RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 A8MVJ9 347 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 CHEK2O96017 543 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PLEKP08567 350 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 CHRNB1P11230 501 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 DPYSQ14117 519 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 C1orf185Q5T7R7 199 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PSRC1Q6PGN9 363 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 FOXR2Q6PJQ5 311 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 SPATA2LQ8IUW3 424 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ERP44Q9BS26 406 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PAG1Q9NWQ8 432 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TRHDEQ9UKU6 1024 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 CCDC61Q9Y6R9 512 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 NUP205Q92621 2012 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 EIF2AK2P19525 551 aaKnown RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 AMPD1P23109 780 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PTGS1P23219 599 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 CD79BP40259 229 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF165P49910 485 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 NME5P56597 212 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 USP46P62068 366 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 HABP2Q14520 560 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PLEKHM3Q6ZWE6 761 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 UNC5CLQ8IV45 518 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ZSCAN1Q8NBB4 408 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 SLC2A13Q96QE2 648 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ADAM21Q9UKJ8 722 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 KIAA0100Q14667 2235 aaKnown RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 FAM186AA6NE01 2351 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 A0A1B0GVG6 124 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PLK4O00444 970 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 LYPLA2O95372 231 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 BMP1P13497 986 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 RPL13P26373 211 aaKnown RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TTMPQ5BVD1 217 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TPRA1Q86W33 373 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 FATE1Q969F0 183 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ARL5BQ96KC2 179 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 V9GYQ6 96 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ICMTO60725 284 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 GNASQ5JWF2 1037 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 FAM26FQ5R3K3 315 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 FYB2Q5VWT5 728 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 AFAP1L2Q8N4X5 818 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PRICKLE1Q96MT3 831 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 EMILIN2Q9BXX0 1053 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 FRMD8P1Q9BZ68 369 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 LRFN2Q9ULH4 789 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 KDM2BQ8NHM5 1336 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 hCG_1809904A0A1W2PP81 198 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 A0A1W2PPE2 198 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 A0A1W2PR64 198 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms