RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ARID5AQ03989 594 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 DDR1Q08345 913 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 BMPR2Q13873 1038 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 TRIM25Q14258 630 aaKnown RBP0.89□□□□□ -2.27
VPS35-212ENST00000640313 ASIC2Q16515 512 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 CD300EQ496F6 205 aaPredicted RBP0.89□□□□□ -2.27
VPS35-212ENST00000640313 MEX3CQ5U5Q3 659 aaKnown RBP0.89□□□□□ -2.27
VPS35-212ENST00000640313 Q6ZVL8 140 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 ZNF804AQ7Z570 1209 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 ZNF329Q86UD4 541 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 PIM3Q86V86 326 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 PASD1Q8IV76 773 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 ADGRG5Q8IZF4 528 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 PELI3Q8N2H9 469 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 EFHBQ8N7U6 833 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 FANCBQ8NB91 859 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 GPR156Q8NFN8 814 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 SNX19Q92543 992 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 TAF15Q92804 592 aaKnown RBP eCLIP0.89□□□□□ -2.27
VPS35-212ENST00000640313 FAM118BQ9BPY3 351 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 MLXIPQ9HAP2 919 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 ARHGEF3Q9NR81 526 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 VSX1Q9NZR4 365 aaPredicted RBP0.89□□□□□ -2.27
VPS35-212ENST00000640313 SCAF8Q9UPN6 1271 aaKnown RBP0.89□□□□□ -2.27
VPS35-212ENST00000640313 NOC2LQ9Y3T9 749 aaKnown RBP0.89□□□□□ -2.27
VPS35-212ENST00000640313 CDY2AQ9Y6F7 541 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 SQORQ9Y6N5 450 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 SPATA31A3Q5VYP0 1347 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 KDM2BQ8NHM5 1336 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 TRIP12Q14669 1992 aaPredicted RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 ZMYM2Q9UBW7 1377 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 ZBTB7CA1YPR0 619 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 LACTBL1A8MY62 500 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 B4DGG1 531 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 ACOT8O14734 319 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 AKR1B10O60218 316 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 PDIA4P13667 645 aaKnown RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 ATP2A2P16615 1042 aaKnown RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 NDUFB7P17568 137 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 ADSLP30566 484 aaPredicted RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 WASP42768 502 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 ALDH1A3P47895 512 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 MANFP55145 182 aaKnown RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 PHC1P78364 1004 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 ZNF844Q08AG5 666 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 INPP5JQ15735 1006 aaPredicted RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 SEPT7Q16181 437 aaKnown RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 KRTAP13-3Q3SY46 172 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 OTUD3Q5T2D3 398 aaPredicted RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 LCE3CQ5T5A8 94 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 DAB2IPQ5VWQ8 1189 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 CAPRIN2Q6IMN6 1127 aaKnown RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 ZNF549Q6P9A3 640 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 ZNF813Q6ZN06 617 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 DEF8Q6ZN54 512 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 KRTAP5-5Q701N2 237 aaPredicted RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 UBE3BQ7Z3V4 1068 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 WDR53Q7Z5U6 358 aaPredicted RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 KIF18BQ86Y91 864 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 JMYQ8N9B5 988 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 ZNF610Q8N9Z0 462 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 PNLDC1Q8NA58 520 aaKnown RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 NLGN4YQ8NFZ3 816 aaPredicted RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 B4GALNT2Q8NHY0 566 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 TBC1D15Q8TC07 691 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 RIN2Q8WYP3 895 aaPredicted RBP0.88□□□□□ -2.27
VPS35-212ENST00000640313 RITA1Q96K30 269 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 LMLNQ96KR4 655 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 GMLQ99445 158 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 MYOCQ99972 504 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 AMBRA1Q9C0C7 1298 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 FAM234AQ9H0X4 552 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 PRDM12Q9H4Q4 367 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 KCNG1Q9UIX4 513 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 UTP18Q9Y5J1 556 aaKnown RBP eCLIP0.88□□□□□ -2.27
VPS35-212ENST00000640313 PPP2R3BQ9Y5P8 575 aa0.88□□□□□ -2.27
VPS35-212ENST00000640313 COL2A1P02458 1487 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 CCDC195A0A1B0GUA6 201 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 CDHR4A6H8M9 788 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 UNCXA6NJT0 531 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 ERI2A8K979 691 aaKnown RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 POC1B-GALNT4F8VUJ3 575 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 H0YIZ8 118 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 H7C1Q1 480 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 FZD9O00144 591 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 PLD2O14939 933 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 DSCR3O14972 297 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 LINC01565O15544 149 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 GRID2O43424 1007 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 TGM5O43548 720 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 TBC1D4O60343 1298 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 TLR2O60603 784 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 CNOT3O75175 753 aaKnown RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 TULP3O75386 442 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 NXPH3O95157 252 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 RHOP08100 348 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 CHRM5P08912 532 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 CYP2A6P11509 494 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 HOXD9P28356 352 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 ECHS1P30084 290 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms