RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ADM5C9JUS6 153 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 C1RP00736 705 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 PROK1P58294 105 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 FOXF2Q12947 444 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 PTPRRQ15256 657 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 KAZNQ674X7 775 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 GADL1Q6ZQY3 521 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 MYCBPAPQ8TBZ2 947 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 POC1BQ8TC44 478 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 TIMP4Q99727 224 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 NEU2Q9Y3R4 380 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 COL3A1P02461 1466 aaPredicted RBP5.56□□□□□ -1.52
CD44-239ENST00000639002 PROP1O75360 226 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 PPP3CBP16298 524 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 ITPKBP27987 946 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 GRIA3P42263 894 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 ADKP55263 362 aaKnown RBP5.55□□□□□ -1.52
CD44-239ENST00000639002 PTPN21Q16825 1174 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 UAP1L1Q3KQV9 507 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 RNF187Q5TA31 235 aaPredicted RBP5.55□□□□□ -1.52
CD44-239ENST00000639002 PPP4R3AQ6IN85 833 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 MICALCLQ6ZW33 695 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 FBXL20Q96IG2 436 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 UROC1Q96N76 676 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 SLC13A1Q9BZW2 595 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 ENTPD2Q9Y5L3 495 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 MRFAP1Q9Y605 127 aa5.55□□□□□ -1.52
CD44-239ENST00000639002 CFAP20Q9Y6A4 193 aaKnown RBP5.55□□□□□ -1.52
CD44-239ENST00000639002 CGB1A6NKQ9 187 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 E7ENX8 843 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 LMO1P25800 156 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 FXR1P51114 621 aaKnown RBP eCLIP5.54□□□□□ -1.52
CD44-239ENST00000639002 TAP2Q03519 686 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 HLXQ14774 488 aaPredicted RBP5.54□□□□□ -1.52
CD44-239ENST00000639002 TXNRD1Q16881 649 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 CCDC93Q567U6 631 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 EFCAB2Q5VUJ9 269 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 TAPT1Q6NXT6 567 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 TTC7BQ86TV6 843 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 SH2D3CQ8N5H7 860 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 TOR1AIP2Q8NFQ8 470 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 SNX19Q92543 992 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 TRIB1Q96RU8 372 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 SIDT1Q9NXL6 827 aaKnown RBP5.54□□□□□ -1.52
CD44-239ENST00000639002 ETAA1Q9NY74 926 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 AGAP1Q9UPQ3 857 aa5.54□□□□□ -1.52
CD44-239ENST00000639002 WIPF3A6NGB9 483 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 INO80B-WBP1J3KQ70 363 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 TOR1BO14657 336 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 ANXA1P04083 346 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 CHRM2P08172 466 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 WT1P19544 449 aaPredicted RBP5.53□□□□□ -1.52
CD44-239ENST00000639002 SLC4A10Q6U841 1118 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 SLC30A10Q6XR72 485 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 PNMA8AQ86V59 439 aaPredicted RBP5.53□□□□□ -1.52
CD44-239ENST00000639002 PDSS2Q86YH6 399 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 SRRM1Q8IYB3 904 aaKnown RBP5.53□□□□□ -1.52
CD44-239ENST00000639002 ANKS1AQ92625 1134 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 SCAMP4Q969E2 229 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 PGBD1Q96JS3 809 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 HEPHQ9BQS7 1158 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 C1orf43Q9BWL3 253 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 ASPSCR1Q9BZE9 553 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 INO80BQ9C086 356 aaPredicted RBP5.53□□□□□ -1.52
CD44-239ENST00000639002 SMOC2Q9H3U7 446 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 ADAM21Q9UKJ8 722 aa5.53□□□□□ -1.52
CD44-239ENST00000639002 ADGRA2Q96PE1 1338 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 PRDX5P30044 214 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 CYP2C19P33261 490 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 NPTX2P47972 431 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 TOB1P50616 345 aaPredicted RBP5.52□□□□□ -1.53
CD44-239ENST00000639002 PSMC1P62191 440 aaKnown RBP5.52□□□□□ -1.53
CD44-239ENST00000639002 PIGFQ07326 219 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 NBPF8Q3BBV2 869 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 AKNAD1Q5T1N1 836 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 LRCH2Q5VUJ6 765 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 ZNF788Q6ZQV5 615 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 FAM90A1Q86YD7 464 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 FAM9AQ8IZU1 332 aaPredicted RBP5.52□□□□□ -1.53
CD44-239ENST00000639002 PRR18Q8N4B5 295 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 SMOQ99835 787 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 PCDHA3Q9Y5H8 950 aa5.52□□□□□ -1.53
CD44-239ENST00000639002 CCDC151A5D8V7 595 aa5.51□□□□□ -1.53
CD44-239ENST00000639002 LINC00473A8K010 186 aa5.51□□□□□ -1.53
CD44-239ENST00000639002 ALG1L2C9J202 215 aa5.51□□□□□ -1.53
CD44-239ENST00000639002 GJB1P08034 283 aa5.51□□□□□ -1.53
CD44-239ENST00000639002 PHKA1P46020 1223 aa5.51□□□□□ -1.53
CD44-239ENST00000639002 HABP2Q14520 560 aaPredicted RBP5.51□□□□□ -1.53
CD44-239ENST00000639002 GRASPQ7Z6J2 395 aaPredicted RBP5.51□□□□□ -1.53
CD44-239ENST00000639002 SARAFQ96BY9 339 aa5.51□□□□□ -1.53
CD44-239ENST00000639002 AMBRA1Q9C0C7 1298 aa5.51□□□□□ -1.53
CD44-239ENST00000639002 BRD9Q9H8M2 597 aa5.51□□□□□ -1.53
CD44-239ENST00000639002 GPR35Q9HC97 309 aa5.51□□□□□ -1.53
CD44-239ENST00000639002 CPNE5Q9HCH3 593 aa5.51□□□□□ -1.53
CD44-239ENST00000639002 ST3GAL5Q9UNP4 418 aa5.51□□□□□ -1.53
CD44-239ENST00000639002 AOX1Q06278 1338 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 SPATA31A3Q5VYP0 1347 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 FNDC1Q4ZHG4 1894 aaPredicted RBP5.5□□□□□ -1.53
CD44-239ENST00000639002 ZNF785A8K8V0 405 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 POLRMTO00411 1230 aaKnown RBP5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms