RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 SCFD1Q8WVM8 642 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 DHTKD1Q96HY7 919 aaPredicted RBP13.68□□□□□ -0.22
PNKP-217ENST00000625216 PRRX2Q99811 253 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 DUSP9Q99956 384 aaKnown RBP13.68□□□□□ -0.22
PNKP-217ENST00000625216 STRA6Q9BX79 667 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 OXCT2Q9BYC2 517 aaPredicted RBP13.68□□□□□ -0.22
PNKP-217ENST00000625216 ASB7Q9H672 318 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 MRPL44Q9H9J2 332 aaKnown RBP13.68□□□□□ -0.22
PNKP-217ENST00000625216 MAFFQ9ULX9 164 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 EXOC7Q9UPT5 735 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 DERAQ9Y315 318 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 NFE2L3Q9Y4A8 694 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 TECTAO75443 2155 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 ANKRD63C9JTQ0 380 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 TBC1D4O60343 1298 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 PPP1R37O75864 691 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 ABLIM3O94929 683 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 ASGR2P07307 311 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 ZNF18P17022 549 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 ELF1P32519 619 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 DEKP35659 375 aaKnown RBP13.67□□□□□ -0.22
PNKP-217ENST00000625216 TNFSF9P41273 254 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 ZCWPW2Q504Y3 356 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 TPGS2Q68CL5 300 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 SLC39A4Q6P5W5 647 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 RSPO2Q6UXX9 243 aaPredicted RBP13.67□□□□□ -0.22
PNKP-217ENST00000625216 NELFCDQ8IXH7 590 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 BEST2Q8NFU1 509 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 ACCSQ96QU6 501 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 KCNK12Q9HB15 430 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 SAMSN1Q9NSI8 373 aaKnown RBP13.67□□□□□ -0.22
PNKP-217ENST00000625216 FANCLQ9NW38 375 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 TUBGCP4Q9UGJ1 667 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 AGO2Q9UKV8 859 aaKnown RBP13.67□□□□□ -0.22
PNKP-217ENST00000625216 PCDHB8Q9UN66 801 aa13.67□□□□□ -0.22
PNKP-217ENST00000625216 M0QZQ0 153 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 N4BP1O75113 896 aaKnown RBP13.66□□□□□ -0.22
PNKP-217ENST00000625216 PRPF6O94906 941 aaKnown RBP13.66□□□□□ -0.22
PNKP-217ENST00000625216 GCNT3O95395 438 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 LAMP2P13473 410 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 ATP1A3P13637 1013 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 ATF2P15336 505 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 FSHRP23945 695 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 HOXD13P35453 343 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 AARSP49588 968 aaKnown RBP eCLIP13.66□□□□□ -0.22
PNKP-217ENST00000625216 ROR1Q01973 937 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 BMT2Q1RMZ1 405 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 CDKAL1Q5VV42 579 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 ANKRD40Q6AI12 368 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 CENPPQ6IPU0 288 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 ZNF280DQ6N043 979 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 SLC7A14Q8TBB6 771 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 KCTD10Q9H3F6 313 aa13.66□□□□□ -0.22
PNKP-217ENST00000625216 UBE4BO95155 1302 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 BICDL2A1A5D9 508 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 ARHGEF37A1IGU5 675 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 EIF3DO15371 548 aaKnown RBP eCLIP13.65□□□□□ -0.22
PNKP-217ENST00000625216 OAZ2O95190 189 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 LDHAP00338 332 aaKnown RBP13.65□□□□□ -0.22
PNKP-217ENST00000625216 NUBP1P53384 320 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 SPAG1Q07617 926 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 CTXN3Q4LDR2 81 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 HSP90AA4PQ58FG1 418 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 ZBTB41Q5SVQ8 909 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 SARM1Q6SZW1 724 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 STXBP4Q6ZWJ1 553 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 GRASPQ7Z6J2 395 aaPredicted RBP13.65□□□□□ -0.22
PNKP-217ENST00000625216 NT5DC4Q86YG4 428 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 ZNF507Q8TCN5 953 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 POMGNT1Q8WZA1 660 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 FAM212AQ96EL1 285 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 MYADMQ96S97 322 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 TMEM206Q9H813 350 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 FBXL5Q9UKA1 691 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 DUSP12Q9UNI6 340 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 C2CD2Q9Y426 696 aa13.65□□□□□ -0.22
PNKP-217ENST00000625216 CCL16O15467 120 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 IL18RAPO95256 599 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 TYMPP19971 482 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 GARTP22102 1010 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 ADSSP30520 456 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 ACOT2P49753 483 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 TPM4P67936 248 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 PLCB2Q00722 1185 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 YWHAHQ04917 246 aaPredicted RBP13.64□□□□□ -0.23
PNKP-217ENST00000625216 KCNA1Q09470 495 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 TMEM132DQ14C87 1099 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 JADE1Q6IE81 842 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 DSTYKQ6XUX3 929 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 USP37Q86T82 979 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 IRF2BP1Q8IU81 584 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 TCEAL8Q8IYN2 117 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 SYCP3Q8IZU3 236 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 IKZF4Q9H2S9 585 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 AVENQ9NQS1 362 aaPredicted RBP13.64□□□□□ -0.23
PNKP-217ENST00000625216 AFF4Q9UHB7 1163 aaKnown RBP13.64□□□□□ -0.23
PNKP-217ENST00000625216 CDH7Q9ULB5 785 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 POLIQ9UNA4 740 aa13.64□□□□□ -0.23
PNKP-217ENST00000625216 ANO9A1A5B4 782 aa13.63□□□□□ -0.23
PNKP-217ENST00000625216 WDR27A2RRH5 827 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms