RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 ALCAMQ13740 583 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 SDHAF4Q5VUM1 108 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 SLC9A9Q8IVB4 645 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 AFAP1L1Q8TED9 768 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 CPSF3Q9UKF6 684 aaKnown RBP11.23□□□□□ -0.61
VPS11-208ENST00000621676 AMFRQ9UKV5 643 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 MYO15AQ9UKN7 3530 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 SPEGQ15772 3267 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 C2CD2LO14523 706 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 B3GAT3O94766 335 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 IFNB1P01574 187 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 CLTAP09496 248 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 NOGQ13253 232 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 ZNF484Q5JVG2 852 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 OR6B2Q6IFH4 312 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 CREG2Q8IUH2 290 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 BRSK2Q8IWQ3 736 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 PWWP2AQ96N64 755 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 PGLYRP2Q96PD5 576 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 FZD8Q9H461 694 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 L2HGDHQ9H9P8 463 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 PRMT7Q9NVM4 692 aaPredicted RBP11.22□□□□□ -0.61
VPS11-208ENST00000621676 ZNF446Q9NWS9 450 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 NFU1Q9UMS0 254 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 PTCH2Q9Y6C5 1203 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 A6NJR5 290 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 MYO1FO00160 1098 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 TLR3O15455 904 aaKnown RBP11.22□□□□□ -0.61
VPS11-208ENST00000621676 CPT1AP50416 773 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 ATXN1P54253 815 aaKnown RBP11.22□□□□□ -0.61
VPS11-208ENST00000621676 BMS1Q14692 1282 aaKnown RBP11.22□□□□□ -0.61
VPS11-208ENST00000621676 ST13P5Q8NFI4 369 aaPredicted RBP11.22□□□□□ -0.61
VPS11-208ENST00000621676 CGRRF1Q99675 332 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 PRDM5Q9NQX1 630 aaPredicted RBP11.22□□□□□ -0.61
VPS11-208ENST00000621676 BCCIPQ9P287 314 aaKnown RBP eCLIP11.22□□□□□ -0.61
VPS11-208ENST00000621676 LDHAP00338 332 aaKnown RBP11.22□□□□□ -0.61
VPS11-208ENST00000621676 OR4Q2P0C623 313 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 FGFR1P11362 822 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 BRCC3P46736 316 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 KCTD16Q68DU8 428 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 C8orf74Q6P047 294 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 SND1Q7KZF4 910 aaKnown RBP eCLIP11.22□□□□□ -0.61
VPS11-208ENST00000621676 SHC3Q92529 594 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 CCDC114Q96M63 670 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 ADAM2Q99965 735 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 MIOSQ9NXC5 875 aa11.22□□□□□ -0.61
VPS11-208ENST00000621676 TTC7AQ9ULT0 858 aaPredicted RBP11.22□□□□□ -0.61
VPS11-208ENST00000621676 MAGEB2O15479 319 aa11.21□□□□□ -0.61
VPS11-208ENST00000621676 INHAP05111 366 aa11.21□□□□□ -0.61
VPS11-208ENST00000621676 TTC3P53804 2025 aa11.21□□□□□ -0.61
VPS11-208ENST00000621676 GPC5P78333 572 aa11.21□□□□□ -0.61
VPS11-208ENST00000621676 FAM71AQ8IYT1 594 aa11.21□□□□□ -0.61
VPS11-208ENST00000621676 CLEC4CQ8WTT0 213 aa11.21□□□□□ -0.61
VPS11-208ENST00000621676 HSPH1Q92598 858 aa11.21□□□□□ -0.61
VPS11-208ENST00000621676 ANKZF1Q9H8Y5 726 aa11.21□□□□□ -0.61
VPS11-208ENST00000621676 NGRNQ9NPE2 291 aaKnown RBP11.21□□□□□ -0.61
VPS11-208ENST00000621676 GLI1P08151 1106 aa11.21□□□□□ -0.62
VPS11-208ENST00000621676 CARSP49589 748 aaKnown RBP11.21□□□□□ -0.62
VPS11-208ENST00000621676 TEX2Q8IWB9 1127 aa11.21□□□□□ -0.62
VPS11-208ENST00000621676 NUCKS1Q9H1E3 243 aaKnown RBP11.21□□□□□ -0.62
VPS11-208ENST00000621676 ERVK-5Q9HDB9 667 aa11.21□□□□□ -0.62
VPS11-208ENST00000621676 USP34Q70CQ2 3546 aa11.21□□□□□ -0.62
VPS11-208ENST00000621676 SPTLC1O15269 473 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 TTI1O43156 1089 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 KIF4AO95239 1232 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 CCDC172P0C7W6 258 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 PYGMP11217 842 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 C15orf59Q2T9L4 293 aaPredicted RBP11.2□□□□□ -0.62
VPS11-208ENST00000621676 ERICH1Q86X53 443 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 OR2W6PQ8NHA6 318 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 TSGA10Q9BZW7 698 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 C2orf40Q9H1Z8 148 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 NRCAMQ92823 1304 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 OTOFQ9HC10 1997 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 ERICH4A6NGS2 130 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 H0YCG3 227 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 SASH3O75995 380 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 HEXIM1O94992 359 aaKnown RBP11.2□□□□□ -0.62
VPS11-208ENST00000621676 F2P00734 622 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 DARSP14868 501 aaKnown RBP11.2□□□□□ -0.62
VPS11-208ENST00000621676 HNRNPH3P31942 346 aaKnown RBP11.2□□□□□ -0.62
VPS11-208ENST00000621676 PPP6R3Q5H9R7 873 aaPredicted RBP11.2□□□□□ -0.62
VPS11-208ENST00000621676 ZC3H3Q8IXZ2 948 aaKnown RBP11.2□□□□□ -0.62
VPS11-208ENST00000621676 CEP112Q8N8E3 955 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 C18orf8Q96DM3 657 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 FBXL18Q96ME1 805 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 RPS6KC1Q96S38 1066 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 JPH2Q9BR39 696 aaPredicted RBP11.2□□□□□ -0.62
VPS11-208ENST00000621676 MED10Q9BTT4 135 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 TMPRSS4Q9NRS4 437 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 NOCTQ9UK39 431 aaKnown RBP11.2□□□□□ -0.62
VPS11-208ENST00000621676 GTF3C4Q9UKN8 822 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 SNX24Q9Y343 169 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 EFCAB8A8MWE9 144 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 AMPD2Q01433 879 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 CDR2Q01850 454 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 RNASELQ05823 741 aaKnown RBP11.2□□□□□ -0.62
VPS11-208ENST00000621676 ITGA7Q13683 1181 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 FAM228AQ86W67 206 aa11.2□□□□□ -0.62
VPS11-208ENST00000621676 JOSD2Q8TAC2 188 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms