RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 SEPHS1P49903 392 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 MRPS22P82650 360 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 KCTD2Q14681 263 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 MAPK6Q16659 721 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 HPS5Q9UPZ3 1129 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ETS1P14921 441 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SDE2Q6IQ49 451 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 USP17L2Q6R6M4 530 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ZNF579Q8NAF0 562 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 GSTCDQ8NEC7 633 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 TOR1BO14657 336 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 RGS5O15539 181 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 TJP3O95049 919 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SLC9A1P19634 815 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 TCP10Q12799 353 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 BFSP2Q13515 415 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 FASTKD1Q53R41 847 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ERMARDQ5T6L9 678 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SKA2Q8WVK7 121 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SPATA16Q9BXB7 569 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 PCDH10Q9P2E7 1040 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 GRIN2BQ13224 1484 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 TNPO2O14787 897 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 FKBP3Q00688 224 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 OTUD3Q5T2D3 398 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 TMEM214Q6NUQ4 689 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SYNE4Q8N205 404 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 MTERF3Q96E29 417 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 PHF23Q9BUL5 403 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 POLE4Q9NR33 117 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ABCC12Q96J65 1359 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 MROH7Q68CQ1 1323 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 KLRF2D3W0D1 207 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 BLVRAP53004 296 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 GSTO1P78417 241 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 HEXIM2Q96MH2 286 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 CCDC28BQ9BUN5 200 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 TEX13BQ9BXU2 312 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 CFBP00751 764 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 IFNA8P32881 189 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SESN2P58004 480 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ANO7Q6IWH7 933 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 PBXIP1Q96AQ6 731 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 PIGSQ96S52 555 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 CDRT15Q96T59 188 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 CEP44Q9C0F1 390 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 AP4S1Q9Y587 144 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 DDX3XO00571 662 aaKnown RBP eCLIP5.27□□□□□ -1.572e-7■■□□□ 13.6
VPS13D-214ENST00000620676 LIN7AO14910 233 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 OXSR1O95747 527 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 TNNC2P02585 160 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ZCCHC23Q6ZST2 131 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 TCAIMQ8N3R3 496 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 FITM2Q8N6M3 262 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ANKS1AQ92625 1134 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 RAD54LQ92698 747 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 EXOSC4Q9NPD3 245 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 RPRD1BQ9NQG5 326 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 VPS45Q9NRW7 570 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 CARD8Q9Y2G2 431 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 COILP38432 576 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 RABL6Q3YEC7 729 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 FAXCQ5TGI0 409 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 DGCR6LQ9BY27 220 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 DENND2DQ9H6A0 471 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 RPAP3Q9H6T3 665 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 C1orf112Q9NSG2 853 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 REXO2Q9Y3B8 237 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 GEMIN4P57678 1058 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ANTXR2P58335 489 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 IFRD2Q12894 506 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 AKAP14Q86UN6 197 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SEMA6BQ9H3T3 888 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 PSMC3IPQ9P2W1 217 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 POGZQ7Z3K3 1410 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 LOC100506127A0A0U1RQW1 187 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 A0A1W2PQC6 194 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 H7C1W4 665 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 PPIP5K2O43314 1243 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 TRMUO75648 421 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SARSP49591 514 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 MFAP3P55082 362 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SLC18A3Q16572 532 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 RBBP7Q16576 425 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 COBLL1Q53SF7 1204 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 YTHDF3Q7Z739 585 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ANKRD23Q86SG2 305 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 TRMT13Q9NUP7 481 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 PRKAG3Q9UGI9 489 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 A2MP01023 1474 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 C15orf38-AP3S2A0A0A6YYH1 394 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 WEE2P0C1S8 567 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ZNF24P17028 368 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 GARSP41250 739 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 COPZ1P61923 177 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 PHC1P78364 1004 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 TFAMQ00059 246 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ZBTB49Q6ZSB9 765 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ARPINQ7Z6K5 226 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 LRRC49Q8IUZ0 686 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms