RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 RASGRF2O14827 1237 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 AP1G1O43747 822 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 GTPBP6O43824 516 aaPredicted RBP10.77□□□□□ -0.68
VPS39-214ENST00000614932 OR52Z1P0C646 297 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 OCM2P0CE71 109 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 OCMP0CE72 109 aaPredicted RBP10.77□□□□□ -0.68
VPS39-214ENST00000614932 SLC5A2P31639 672 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 STX2P32856 288 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 SLCO1A2P46721 670 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 DYMQ7RTS9 669 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 NEK8Q86SG6 692 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 ANKRD42Q8N9B4 389 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 GIMAP1Q8WWP7 306 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 AKT1S1Q96B36 256 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 MASTLQ96GX5 879 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 AP1M1Q9BXS5 423 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 TDRD3Q9H7E2 651 aaKnown RBP10.77□□□□□ -0.68
VPS39-214ENST00000614932 DNAJC18Q9H819 358 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 GID8Q9NWU2 228 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 ZDHHC7Q9NXF8 308 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 IVNS1ABPQ9Y6Y0 642 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 GSC2O15499 205 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 XPOTO43592 962 aaKnown RBP10.77□□□□□ -0.69
VPS39-214ENST00000614932 CCDC22O60826 627 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 CLPTM1O96005 669 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 TFAP2AP05549 437 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 FCER1AP12319 257 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 ANPEPP15144 967 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 SERPINB6P35237 376 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 HOXD13P35453 343 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 GPC3P51654 580 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 CHN2P52757 468 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 GFPT1Q06210 699 aaPredicted RBP10.77□□□□□ -0.69
VPS39-214ENST00000614932 GABPAQ06546 454 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 C16orf72Q14CZ0 275 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 NADK2Q4G0N4 442 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 MFSD5Q6N075 450 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 GABPB2Q8TAK5 448 aaPredicted RBP10.77□□□□□ -0.69
VPS39-214ENST00000614932 CCDC110Q8TBZ0 833 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 BTBD10Q9BSF8 475 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 C2orf49Q9BVC5 232 aaPredicted RBP10.77□□□□□ -0.69
VPS39-214ENST00000614932 RPAP3Q9H6T3 665 aaPredicted RBP10.77□□□□□ -0.69
VPS39-214ENST00000614932 JMJD4Q9H9V9 463 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 PARVGQ9HBI0 331 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 MLXIPLQ9NP71 852 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 STARD13Q9Y3M8 1113 aa10.77□□□□□ -0.69
VPS39-214ENST00000614932 USP17L15C9J2P7 530 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 USP17L13C9JLJ4 530 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 USP17L11C9JVI0 530 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 USP17L18D6R9N7 530 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 USP17L22D6RA61 530 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 USP17L17D6RBQ6 530 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 USP17L19D6RCP7 530 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 USP17L20D6RJB6 530 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 PGRMC1O00264 195 aaKnown RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 NKRFO15226 690 aaKnown RBP eCLIP10.76□□□□□ -0.69
VPS39-214ENST00000614932 TTLL1O95922 423 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 SMIM18P0DKX4 95 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 CDH3P22223 829 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 BDNFP23560 247 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 PPARGP37231 505 aaPredicted RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 SLC1A4P43007 532 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 HSD17B4P51659 736 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 USP17L24Q0WX57 530 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 IKQ13123 557 aaPredicted RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 THOC5Q13769 683 aaKnown RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 RPS6KA1Q15418 735 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 ZNF658Q5TYW1 1059 aaPredicted RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 ARL6IP4Q66PJ3 421 aaKnown RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 SPOPLQ6IQ16 392 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 USP17L6PQ6QN14 398 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 VSTM1Q6UX27 236 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 MCUR1Q96AQ8 359 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 EME1Q96AY2 570 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 NUDT12Q9BQG2 462 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 PLVAPQ9BX97 442 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 KLHL4Q9C0H6 718 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 LRRC27Q9C0I9 530 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 KCNK9Q9NPC2 374 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 NDE1Q9NXR1 346 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 PITPNM2Q9BZ72 1349 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 KRIT1O00522 736 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 ADCY6O43306 1168 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 EXOC3O60645 756 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 GAS8O95995 478 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 UQCRBP14927 111 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 GSSP48637 474 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 PCYT1AP49585 367 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 ASIC1P78348 528 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 EN1Q05925 392 aaPredicted RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 NAB2Q15742 525 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 DHRS4L2Q6PKH6 230 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 RASSF3Q86WH2 238 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 GPATCH1Q9BRR8 931 aaKnown RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 TUBGCP2Q9BSJ2 902 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 MYH4Q9Y623 1939 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 CLRN2A0PK11 232 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 H0YIN7 160 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 KMOO15229 486 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms