RNA–Protein interactions for RNA: ENST00000600523.5

SRRM1-223, Transcript of serine and arginine repetitive matrix 1, human

TSL 5

Gene SRRM1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRRM1-223	ENST00000600523	PIK3CA	P42336	1068 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	LHX1	P48742	406 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	MYL7	Q01449	175 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	ITIH3	Q06033	890 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	SMAD4	Q13485	552 aa	Known RBP	13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	NCOA4	Q13772	614 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	RAB33A	Q14088	237 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	SGSM1	Q2NKQ1	1148 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	ZNF699	Q32M78	642 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	DCAF17	Q5H9S7	520 aa	Predicted RBP	13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	TPGS2	Q68CL5	300 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	TTI2	Q6NXR4	508 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	CCDC149	Q6ZUS6	474 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	RTL10	Q7L3V2	364 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	FRMD5	Q7Z6J6	570 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	FAM114A1	Q8IWE2	563 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	TOP6BL	Q8N6T0	577 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	SLC22A17	Q8WUG5	538 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	TAF4B	Q92750	862 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	EEF2KMT	Q96G04	330 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	RIPOR3	Q96MK2	946 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	CLSTN3	Q9BQT9	956 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	MAN1C1	Q9NR34	630 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	GDAP2	Q9NXN4	497 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	FBXL5	Q9UKA1	691 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	MAFF	Q9ULX9	164 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	TIMM13	Q9Y5L4	95 aa	Predicted RBP	13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	TRANK1	O15050	2925 aa		13.98	□□□□□ -0.17
SRRM1-223	ENST00000600523	PRRG1	O14668	218 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	SPTLC1	O15269	473 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	TGM5	O43548	720 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	STAU1	O95793	577 aa	Known RBP	13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	GLP2R	O95838	553 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	CYP11A1	P05108	521 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	EPCAM	P16422	314 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	IGFBP6	P24592	240 aa	Predicted RBP	13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	ERCC5	P28715	1186 aa	Predicted RBP	13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	MXI1	P50539	228 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	PMS1	P54277	932 aa	Known RBP	13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	STX17	P56962	302 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	TSPY1	Q01534	308 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	TFF2	Q03403	129 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	MRPL58	Q14197	206 aa	Known RBP	13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	CLUL1	Q15846	466 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	UVSSA	Q2YD98	709 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	WDR72	Q3MJ13	1102 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	ZACN	Q401N2	412 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	ZNF667	Q5HYK9	610 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	KRT39	Q6A163	491 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	PTCRA	Q6ISU1	281 aa	Predicted RBP	13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	SLC8B1	Q6J4K2	584 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	CYP26C1	Q6V0L0	522 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	CREBRF	Q8IUR6	639 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	ZC3H3	Q8IXZ2	948 aa	Known RBP	13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	KREMEN2	Q8NCW0	462 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	ZNF461	Q8TAF7	563 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	ASB2	Q96Q27	587 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	NAT10	Q9H0A0	1025 aa	Known RBP	13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	MMRN2	Q9H8L6	949 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	PIDD1	Q9HB75	910 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	TMEM8A	Q9HCN3	771 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	PRDM6	Q9NQX0	595 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	ANO10	Q9NW15	660 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	MAGEC2	Q9UBF1	373 aa	Predicted RBP	13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	SIX4	Q9UIU6	781 aa		13.97	□□□□□ -0.17
SRRM1-223	ENST00000600523	N4BP1	O75113	896 aa	Known RBP	13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	C4BPA	P04003	597 aa	Known RBP	13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	TRIM49	P0CI25	452 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	TRIM49C	P0CI26	452 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	PCSK1	P29120	753 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	LTBR	P36941	435 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	GCLM	P48507	274 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	DLG4	P78352	724 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	ROR1	Q01973	937 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	SMARCB1	Q12824	385 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	KCNC3	Q14003	757 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	STX1A	Q16623	288 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	WDR44	Q5JSH3	913 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	TJAP1	Q5JTD0	557 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	PPM1L	Q5SGD2	360 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	ATAT1	Q5SQI0	421 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	TDRD10	Q5VZ19	366 aa	Known RBP	13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	WSCD1	Q658N2	575 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	SV2A	Q7L0J3	742 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	DCP1B	Q8IZD4	617 aa	Known RBP	13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	ADGRF2	Q8IZF7	708 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	ZNF516	Q92618	1163 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	NECTIN4	Q96NY8	510 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	SRRT	Q9BXP5	876 aa	Known RBP	13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	SNX25	Q9H3E2	840 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	ZDHHC7	Q9NXF8	308 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	CLEC1B	Q9P126	229 aa		13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	NXF1	Q9UBU9	619 aa	Known RBP	13.96	□□□□□ -0.17
SRRM1-223	ENST00000600523	MYO7A	Q13402	2215 aa		13.95	□□□□□ -0.18
SRRM1-223	ENST00000600523	XYLB	O75191	536 aa		13.95	□□□□□ -0.18
SRRM1-223	ENST00000600523	CST3	P01034	146 aa	Predicted RBP	13.95	□□□□□ -0.18
SRRM1-223	ENST00000600523	C8A	P07357	584 aa		13.95	□□□□□ -0.18
SRRM1-223	ENST00000600523	FAM163B	P0C2L3	166 aa		13.95	□□□□□ -0.18
SRRM1-223	ENST00000600523	SPATA31D3	P0C874	917 aa		13.95	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms