RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 LOC730098B7Z3J9 87 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 PRPF40AO75400 957 aaKnown RBP14.93□□□□□ -0.02
UPF1-205ENST00000598209 ABLIM3O94929 683 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 PAPLNO95428 1278 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 CYP11A1P05108 521 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 CPB1P15086 417 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 CASP4P49662 377 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 BFSP1Q12934 665 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 PPM1LQ5SGD2 360 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 CEP135Q66GS9 1140 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 CYP26C1Q6V0L0 522 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 SLC7A14Q8TBB6 771 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 ZNF707Q96C28 371 aaPredicted RBP14.93□□□□□ -0.02
UPF1-205ENST00000598209 IPO9Q96P70 1041 aaKnown RBP14.93□□□□□ -0.02
UPF1-205ENST00000598209 OXCT2Q9BYC2 517 aaPredicted RBP14.93□□□□□ -0.02
UPF1-205ENST00000598209 RHOBTB2Q9BYZ6 727 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 PRKD2Q9BZL6 878 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 GZF1Q9H116 711 aaPredicted RBP14.93□□□□□ -0.02
UPF1-205ENST00000598209 PIDD1Q9HB75 910 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 DSEQ9UL01 958 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 R3HCC1Q9Y3T6 440 aaKnown RBP14.93□□□□□ -0.02
UPF1-205ENST00000598209 MYO10Q9HD67 2058 aa14.93□□□□□ -0.02
UPF1-205ENST00000598209 OR6C75A6NL08 312 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 HNRNPA1P09651 372 aaKnown RBP eCLIP14.92□□□□□ -0.02
UPF1-205ENST00000598209 SP100P23497 879 aaPredicted RBP14.92□□□□□ -0.02
UPF1-205ENST00000598209 NR2F2P24468 414 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 HOXA9P31269 272 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 ELF1P32519 619 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 PRCPP42785 496 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 NFIL3Q16649 462 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 UVSSAQ2YD98 709 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 WSCD1Q658N2 575 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 TPGS2Q68CL5 300 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 CCDC149Q6ZUS6 474 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 TRAPPC11Q7Z392 1133 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 METTL23Q86XA0 190 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 PLEKHO2Q8TD55 490 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 PARD3BQ8TEW8 1205 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 TSHZ2Q9NRE2 1034 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 MAN1B1Q9UKM7 699 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 FRMD4BQ9Y2L6 1034 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 DOCK8Q8NF50 2099 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 NOTCH4Q99466 2003 aa14.92□□□□□ -0.02
UPF1-205ENST00000598209 CCL16O15467 120 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 OR4Q2P0C623 313 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 ATF2P15336 505 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 RPL13P26373 211 aaKnown RBP14.91□□□□□ -0.02
UPF1-205ENST00000598209 MYO1EQ12965 1108 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 ZCWPW2Q504Y3 356 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 COBLL1Q53SF7 1204 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 ISM2Q6H9L7 571 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 RNF19BQ6ZMZ0 732 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 CLEC17AQ6ZS10 378 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 RTL10Q7L3V2 364 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 ZNF516Q92618 1163 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 TMEM209Q96SK2 561 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 GTPBP4Q9BZE4 634 aaKnown RBP14.91□□□□□ -0.02
UPF1-205ENST00000598209 CYP4F11Q9HBI6 524 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 WDR6Q9NNW5 1121 aaKnown RBP14.91□□□□□ -0.02
UPF1-205ENST00000598209 AFF4Q9UHB7 1163 aaKnown RBP14.91□□□□□ -0.02
UPF1-205ENST00000598209 NR2E1Q9Y466 385 aa14.91□□□□□ -0.02
UPF1-205ENST00000598209 LRRIQ3A6PVS8 624 aaPredicted RBP14.9□□□□□ -0.02
UPF1-205ENST00000598209 C2CD4DB7Z1M9 353 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 PRRG1O14668 218 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 HUS1O60921 280 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 XYLBO75191 536 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 SEC24AO95486 1093 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 ADCY1Q08828 1119 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 ADAM9Q13443 819 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 EDRF1Q3B7T1 1238 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 TCEAL8Q8IYN2 117 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 THEM5Q8N1Q8 247 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 PDCL2Q8N4E4 241 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 OR10T2Q8NGX3 314 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 TMC2Q8TDI7 906 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 KHSRPQ92945 711 aaKnown RBP eCLIP14.9□□□□□ -0.02
UPF1-205ENST00000598209 HPDLQ96IR7 371 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 RTP3Q9BQQ7 232 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 GDAP2Q9NXN4 497 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 MAFFQ9ULX9 164 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 L1RE1Q9UN81 338 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 POLIQ9UNA4 740 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 SNX9Q9Y5X1 595 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 CLUHO75153 1309 aa14.9□□□□□ -0.02
UPF1-205ENST00000598209 MAPK13O15264 365 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 PHACTR2O75167 634 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 AKAP3O75969 853 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 CST3P01034 146 aaPredicted RBP14.89□□□□□ -0.03
UPF1-205ENST00000598209 POU2F2P09086 479 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 AP3M2P53677 418 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 DLG4P78352 724 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 CLDN10P78369 228 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 GPR17Q13304 367 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 TRPC3Q13507 836 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 CENPPQ6IPU0 288 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 RNF135Q8IUD6 432 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 FAM186BQ8IYM0 893 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 ADSSL1Q8N142 457 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 TMEM86AQ8N2M4 240 aa14.89□□□□□ -0.03
UPF1-205ENST00000598209 TDRD5Q8NAT2 981 aaKnown RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms