RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 POU5F1Q01860 360 aaKnown RBP10.21□□□□□ -0.77
TRIM28-208ENST00000597172 ENPEPQ07075 957 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 KCNH2Q12809 1159 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 BFSP1Q12934 665 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 PSMD6Q15008 389 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 MAN2A1Q16706 1144 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 ALKAL1Q6UXT8 129 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 C1orf210Q8IVY1 113 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 BRSK2Q8IWQ3 736 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 PLCD3Q8N3E9 789 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 TDRD5Q8NAT2 981 aaKnown RBP10.21□□□□□ -0.77
TRIM28-208ENST00000597172 APBB2Q92870 758 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 CCDC127Q96BQ5 260 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 ZNF689Q96CS4 500 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-208ENST00000597172 FAM84AQ96KN4 292 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 ACAP3Q96P50 834 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 XPO4Q9C0E2 1151 aaKnown RBP10.21□□□□□ -0.77
TRIM28-208ENST00000597172 NDST4Q9H3R1 872 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 NXF3Q9H4D5 531 aaKnown RBP10.21□□□□□ -0.77
TRIM28-208ENST00000597172 PDE11AQ9HCR9 933 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 RTN4Q9NQC3 1192 aaKnown RBP10.21□□□□□ -0.77
TRIM28-208ENST00000597172 RGS18Q9NS28 235 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 FAM105AQ9NUU6 356 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 RBAKQ9NYW8 714 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-208ENST00000597172 CDH22Q9UJ99 828 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 IPPQ9Y573 584 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.21□□□□□ -0.77
TRIM28-208ENST00000597172 MRPL42Q9Y6G3 142 aaKnown RBP10.21□□□□□ -0.77
TRIM28-208ENST00000597172 TTC26A0AVF1 554 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 MEIS3P2A8K0S8 358 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 C9IYK1 514 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 SPTLC1O15269 473 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 CXCL8P10145 99 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 KRT13P13646 458 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 PRKCSHP14314 528 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-208ENST00000597172 AKAP5P24588 427 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 ZNF75DP51815 510 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 PPP3CAQ08209 521 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 PTPRJQ12913 1337 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 KCNC3Q14003 757 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 KYAT1Q16773 422 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 SCARA3Q6AZY7 606 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 CES5AQ6NT32 575 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 AGMOQ6ZNB7 445 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 APBB1IPQ7Z5R6 666 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-208ENST00000597172 ZNF598Q86UK7 904 aaKnown RBP10.2□□□□□ -0.78
TRIM28-208ENST00000597172 NBEAQ8NFP9 2946 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 NETO1Q8TDF5 533 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 FTHL17Q9BXU8 183 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 TRIM5Q9C035 493 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 RPF1Q9H9Y2 349 aaKnown RBP10.2□□□□□ -0.78
TRIM28-208ENST00000597172 TOPORSQ9NS56 1045 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-208ENST00000597172 LHX6Q9UPM6 363 aa10.2□□□□□ -0.78
TRIM28-208ENST00000597172 LGALS16A8MUM7 142 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 RECQL4O94761 1208 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 ADCY5O95622 1261 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 AFPP02771 609 aaKnown RBP10.19□□□□□ -0.78
TRIM28-208ENST00000597172 C4BPAP04003 597 aaKnown RBP10.19□□□□□ -0.78
TRIM28-208ENST00000597172 DLATP10515 647 aaKnown RBP10.19□□□□□ -0.78
TRIM28-208ENST00000597172 PBX1P40424 430 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 PPP2R3AQ06190 1150 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 KCNMA1Q12791 1236 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 TDGQ13569 410 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 HSP90AA2PQ14568 343 aaPredicted RBP10.19□□□□□ -0.78
TRIM28-208ENST00000597172 CBWD6Q4V339 395 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 XKR4Q5GH76 650 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 DCAF17Q5H9S7 520 aaPredicted RBP10.19□□□□□ -0.78
TRIM28-208ENST00000597172 CBWD3Q5JTY5 395 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 CBWD5Q5RIA9 395 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 N4BP2L1Q5TBK1 243 aaPredicted RBP10.19□□□□□ -0.78
TRIM28-208ENST00000597172 TCERG1LQ5VWI1 586 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 LMBRD2Q68DH5 695 aaPredicted RBP10.19□□□□□ -0.78
TRIM28-208ENST00000597172 DPY19L2P1Q6NXN4 242 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 LLGL2Q6P1M3 1020 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 FAM43BQ6ZT52 329 aaPredicted RBP10.19□□□□□ -0.78
TRIM28-208ENST00000597172 SLC24A5Q71RS6 500 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 ECHDC2Q86YB7 292 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 EFCAB13Q8IY85 973 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 TMEM130Q8N3G9 435 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 ANKRD20A12PQ8NF67 263 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 OR5B17Q8NGF7 314 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 LPPQ93052 612 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 FAM212AQ96EL1 285 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 ZMAT2Q96NC0 199 aaKnown RBP10.19□□□□□ -0.78
TRIM28-208ENST00000597172 CGRRF1Q99675 332 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 CCDC94Q9BW85 323 aaPredicted RBP10.19□□□□□ -0.78
TRIM28-208ENST00000597172 APOL6Q9BWW8 343 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 TRIM6Q9C030 488 aaPredicted RBP10.19□□□□□ -0.78
TRIM28-208ENST00000597172 ADAM7Q9H2U9 754 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 PLEKHA5Q9HAU0 1116 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 RNF19AQ9NV58 838 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 KLK14Q9P0G3 267 aa10.19□□□□□ -0.78
TRIM28-208ENST00000597172 TULP1O00294 542 aaPredicted RBP10.18□□□□□ -0.78
TRIM28-208ENST00000597172 PMM2O15305 246 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 LRRN2O75325 713 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 DGKIO75912 1065 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 IL18RAPO95256 599 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 DCNP07585 359 aaKnown RBP10.18□□□□□ -0.78
TRIM28-208ENST00000597172 ITGA4P13612 1032 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 GTF2H1P32780 548 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms