RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 NRLP54845 237 aa16.13■□□□□ 0.17
UPF1-204ENST00000596842 SPARCL1Q14515 664 aa16.13■□□□□ 0.17
UPF1-204ENST00000596842 LVRNQ6Q4G3 990 aa16.13■□□□□ 0.17
UPF1-204ENST00000596842 TRIM4Q9C037 500 aa16.13■□□□□ 0.17
UPF1-204ENST00000596842 KIAA1683Q9H0B3 1180 aa16.13■□□□□ 0.17
UPF1-204ENST00000596842 POLR3FQ9H1D9 316 aaPredicted RBP16.13■□□□□ 0.17
UPF1-204ENST00000596842 IVNS1ABPQ9Y6Y0 642 aa16.13■□□□□ 0.17
UPF1-204ENST00000596842 CD19P15391 556 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 ORC1Q13415 861 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 BAATQ14032 418 aaPredicted RBP16.12■□□□□ 0.17
UPF1-204ENST00000596842 ZNF268Q14587 947 aaPredicted RBP16.12■□□□□ 0.17
UPF1-204ENST00000596842 RHBDF2Q6PJF5 856 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 ARL10Q8N8L6 244 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 KIAA1586Q9HCI6 787 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 MAN1A1P33908 653 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 MYBPC2Q14324 1141 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 STAT4Q14765 748 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 MTFR1Q15390 333 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 CCDC6Q16204 474 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 ANKRD20A2Q5SQ80 823 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 ANKRD20A1Q5TYW2 823 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 ANKRD20A3Q5VUR7 823 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 LONP2Q86WA8 852 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 CCDC134Q9H6E4 229 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 PCSK1NQ9UHG2 260 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 SPDYE2BA6NHP3 402 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 ICAM1P05362 532 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 SPDYE6P0CI01 402 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 POLGP54098 1239 aaPredicted RBP16.12■□□□□ 0.17
UPF1-204ENST00000596842 SLC1A5Q15758 541 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 RBBP8NLQ8NC74 664 aaPredicted RBP16.12■□□□□ 0.17
UPF1-204ENST00000596842 ZNF570Q96NI8 536 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 TBC1D22BQ9NU19 505 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 NKX1-2Q9UD57 310 aaPredicted RBP16.12■□□□□ 0.17
UPF1-204ENST00000596842 NRAPQ86VF7 1730 aa16.12■□□□□ 0.17
UPF1-204ENST00000596842 ENTPD5O75356 428 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 APBA3O96018 575 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 SMAD1Q15797 465 aaKnown RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 NUDCD1Q96RS6 583 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 TARS2Q9BW92 718 aaKnown RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 GINM1Q9NU53 330 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 ZMYND8Q9ULU4 1186 aaPredicted RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 MYPNQ86TC9 1320 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 KLRG2A4D1S0 409 aaPredicted RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 CFAP69A5D8W1 941 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 PIK3R2O00459 728 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 ATP2A1O14983 1001 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 MTA2O94776 668 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 MAP3K6O95382 1288 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 CCND1P24385 295 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 MAMLD1Q13495 774 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 TDRD10Q5VZ19 366 aaKnown RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 CDR2LQ86X02 465 aaPredicted RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 MAP4K3Q8IVH8 894 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 C12orf50Q8NA57 414 aaPredicted RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 RBAKQ9NYW8 714 aaPredicted RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 MAPK13O15264 365 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 SNUPNO95149 360 aaKnown RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 UNGP13051 313 aaPredicted RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 BASP1P80723 227 aaKnown RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 PGM5Q15124 567 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 MFSD4BQ5TF39 518 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 RHPN2Q8IUC4 686 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 KCTD17Q8N5Z5 321 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 CNKSR2Q8WXI2 1034 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 TXLNGQ9NUQ3 528 aa16.11■□□□□ 0.17
UPF1-204ENST00000596842 AGO2Q9UKV8 859 aaKnown RBP16.11■□□□□ 0.17
UPF1-204ENST00000596842 C2orf71A6NGG8 1288 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 ZNF862O60290 1169 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 UNC5CO95185 931 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 WEE2P0C1S8 567 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 LRRC23Q53EV4 343 aaPredicted RBP16.1■□□□□ 0.17
UPF1-204ENST00000596842 TAF1BQ53T94 588 aaPredicted RBP16.1■□□□□ 0.17
UPF1-204ENST00000596842 TMEM63BQ5T3F8 832 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 BZW1Q7L1Q6 419 aaKnown RBP16.1■□□□□ 0.17
UPF1-204ENST00000596842 MTDHQ86UE4 582 aaKnown RBP16.1■□□□□ 0.17
UPF1-204ENST00000596842 MCF2L2Q86YR7 1114 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 TTC8Q8TAM2 541 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 QTRT2Q9H974 415 aaKnown RBP16.1■□□□□ 0.17
UPF1-204ENST00000596842 MRPL47Q9HD33 250 aaKnown RBP16.1■□□□□ 0.17
UPF1-204ENST00000596842 CHKBQ9Y259 395 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 PCDHA10Q9Y5I2 948 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 ADRA1DP25100 572 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 NCKAP1LP55160 1127 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 TFDP1Q14186 410 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 CCNG2Q16589 344 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 DNAJC24Q6P3W2 148 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 DTX3LQ8TDB6 740 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 PYROXD1Q8WU10 500 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 WNK4Q96J92 1243 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 IMPG2Q9BZV3 1241 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 SYNCQ9H7C4 482 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 PTPRJQ12913 1337 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 GTF2H1P32780 548 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 DBN1Q16643 649 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 MDH1BQ5I0G3 518 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 PRAMEF18Q5VWM3 479 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 B3GNT9Q6UX72 402 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 PALM2Q8IXS6 379 aa16.1■□□□□ 0.17
UPF1-204ENST00000596842 TTC17Q96AE7 1141 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms