RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 DEF6Q9H4E7 631 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 HAUS4Q9H6D7 363 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 NHEJ1Q9H9Q4 299 aaPredicted RBP15.68■□□□□ 0.1
VRK3-212ENST00000596814 CNTN6Q9UQ52 1028 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 ZKSCAN5Q9Y2L8 839 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 COL4A6Q14031 1691 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 ZBBXA8MT70 800 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 DGKIO75912 1065 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 B3GAT3O94766 335 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 CLCN1P35523 988 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 EIF4A3P38919 411 aaKnown RBP15.67■□□□□ 0.1
VRK3-212ENST00000596814 PDE6CP51160 858 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 CDH8P55286 799 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 MAPK8IP2Q13387 824 aaPredicted RBP15.67■□□□□ 0.1
VRK3-212ENST00000596814 MTF1Q14872 753 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 PAN2Q504Q3 1202 aaKnown RBP15.67■□□□□ 0.1
VRK3-212ENST00000596814 RAD9BQ6WBX8 426 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 TTC39CQ8N584 583 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 CCDC42Q96M95 316 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 LBHD1Q9BQE6 289 aaPredicted RBP15.67■□□□□ 0.1
VRK3-212ENST00000596814 PYCARDQ9ULZ3 195 aa15.67■□□□□ 0.1
VRK3-212ENST00000596814 HUS1O60921 280 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 PAX3P23760 479 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 CYLC1P35663 651 aaPredicted RBP15.66■□□□□ 0.1
VRK3-212ENST00000596814 OR1G1P47890 313 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 AARSP49588 968 aaKnown RBP eCLIP15.66■□□□□ 0.1
VRK3-212ENST00000596814 ZNF132P52740 706 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 EPHB4P54760 987 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 PTK2Q05397 1052 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 INCA1Q0VD86 236 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 TMEM240Q5SV17 173 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 SLC47A2Q86VL8 602 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 CCDC170Q8IYT3 715 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 TNS4Q8IZW8 715 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 NRDE2Q9H7Z3 1164 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 DNAJB4Q9UDY4 337 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 TSC2P49815 1807 aa15.66■□□□□ 0.1
VRK3-212ENST00000596814 TMEM189-UBE2V1I3L0A0 370 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 CILPO75339 1184 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 KIF4AO95239 1232 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 IGFBP6P24592 240 aaPredicted RBP15.65■□□□□ 0.1
VRK3-212ENST00000596814 KIF11P52732 1056 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 BPIFB4P59827 614 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 SOWAHAQ2M3V2 549 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 FAM117BQ6P1L5 589 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 DCLRE1AQ6PJP8 1040 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 DSTYKQ6XUX3 929 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 ZNF571Q7Z3V5 609 aaPredicted RBP15.65■□□□□ 0.1
VRK3-212ENST00000596814 VPS36Q86VN1 386 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 TOP6BLQ8N6T0 577 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 APPL2Q8NEU8 664 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 EPS8L1Q8TE68 723 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 HASPINQ8TF76 798 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.65■□□□□ 0.11e-6■■■□□ 15.1
VRK3-212ENST00000596814 MRPL45Q9BRJ2 306 aaKnown RBP15.65■□□□□ 0.1
VRK3-212ENST00000596814 BARX2Q9UMQ3 279 aaPredicted RBP15.65■□□□□ 0.1
VRK3-212ENST00000596814 L1RE1Q9UN81 338 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 CYB561D2O14569 222 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 AKR1B10O60218 316 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 TACC1O75410 805 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 CYP11B1P15538 503 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 ANXA13P27216 316 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 ZNF394Q53GI3 561 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 DPH6Q7L8W6 267 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 LIMS2Q7Z4I7 341 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 TMCO2Q7Z6W1 182 aaPredicted RBP15.65■□□□□ 0.1
VRK3-212ENST00000596814 NOP9Q86U38 636 aaKnown RBP15.65■□□□□ 0.1
VRK3-212ENST00000596814 ADGRF2Q8IZF7 708 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 SENP8Q96LD8 212 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 TMEM175Q9BSA9 504 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 ACP6Q9NPH0 428 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 HCSTQ9UBK5 93 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 HMGXB4Q9UGU5 601 aa15.65■□□□□ 0.1
VRK3-212ENST00000596814 NOCTQ9UK39 431 aaKnown RBP15.65■□□□□ 0.1
VRK3-212ENST00000596814 PRG3Q9Y2Y8 225 aaPredicted RBP15.65■□□□□ 0.1
VRK3-212ENST00000596814 EPN1Q9Y6I3 576 aaPredicted RBP15.65■□□□□ 0.1
VRK3-212ENST00000596814 NDUFA10O95299 355 aa15.64■□□□□ 0.09
VRK3-212ENST00000596814 GNA15P30679 374 aa15.64■□□□□ 0.09
VRK3-212ENST00000596814 NDST1P52848 882 aa15.64■□□□□ 0.09
VRK3-212ENST00000596814 ASTE1Q2TB18 679 aaPredicted RBP15.64■□□□□ 0.09
VRK3-212ENST00000596814 TIGD5Q53EQ6 642 aa15.64■□□□□ 0.09
VRK3-212ENST00000596814 CD300LGQ6UXG3 332 aa15.64■□□□□ 0.09
VRK3-212ENST00000596814 TOGARAM2Q6ZUX3 1019 aa15.64■□□□□ 0.09
VRK3-212ENST00000596814 PDCL2Q8N4E4 241 aa15.64■□□□□ 0.09
VRK3-212ENST00000596814 SLC20A1Q8WUM9 679 aa15.64■□□□□ 0.09
VRK3-212ENST00000596814 KBTBD7Q8WVZ9 684 aa15.64■□□□□ 0.09
VRK3-212ENST00000596814 ZNF689Q96CS4 500 aaPredicted RBP15.64■□□□□ 0.09
VRK3-212ENST00000596814 SYT11Q9BT88 431 aa15.64■□□□□ 0.09
VRK3-212ENST00000596814 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.64■□□□□ 0.09
VRK3-212ENST00000596814 RC3H2Q9HBD1 1191 aaKnown RBP15.64■□□□□ 0.09
VRK3-212ENST00000596814 SPTLC3Q9NUV7 552 aa15.64■□□□□ 0.09
VRK3-212ENST00000596814 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.64■□□□□ 0.09
VRK3-212ENST00000596814 ARHGEF37A1IGU5 675 aa15.63■□□□□ 0.09
VRK3-212ENST00000596814 F8W810 466 aa15.63■□□□□ 0.09
VRK3-212ENST00000596814 IPO7O95373 1038 aaKnown RBP15.63■□□□□ 0.09
VRK3-212ENST00000596814 ITGB1P05556 798 aa15.63■□□□□ 0.09
VRK3-212ENST00000596814 PAEPP09466 180 aa15.63■□□□□ 0.09
VRK3-212ENST00000596814 ODC1P11926 461 aa15.63■□□□□ 0.09
VRK3-212ENST00000596814 BRCC3P46736 316 aa15.63■□□□□ 0.09
VRK3-212ENST00000596814 SLC11A1P49279 550 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms