RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 A0A0B4J269 797 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 ANO9A1A5B4 782 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 MTMR11A4FU01 709 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 OR6C75A6NL08 312 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 HEPACAM2A8MVW5 462 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 PIRO00625 290 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 OGTO15294 1046 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 CD2BP2O95400 341 aaKnown RBP12.76□□□□□ -0.37
CLIP3-204ENST00000590559 CHRNB1P11230 501 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 MYL4P12829 197 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 GUCY2FP51841 1108 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 GTF2BQ00403 316 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 PPP2R3AQ06190 1150 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 DUSP4Q13115 394 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 ZRSR1Q15695 479 aaKnown RBP12.76□□□□□ -0.37
CLIP3-204ENST00000590559 KYAT1Q16773 422 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 GAREM2Q75VX8 874 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 DGLUCYQ7Z3D6 616 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 ATRIPQ8WXE1 791 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 E2F7Q96AV8 911 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 LRRC3BQ96PB8 259 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 CPSF3Q9UKF6 684 aaKnown RBP12.76□□□□□ -0.37
CLIP3-204ENST00000590559 SMG5Q9UPR3 1016 aaKnown RBP12.76□□□□□ -0.37
CLIP3-204ENST00000590559 KIF3AQ9Y496 699 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 PIAS3Q9Y6X2 628 aa12.76□□□□□ -0.37
CLIP3-204ENST00000590559 A0A1W2PRU2 124 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 CHADO15335 359 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 CYP11A1P05108 521 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 PAX3P23760 479 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 GJB2P29033 226 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 WEE1P30291 646 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 PLD1Q13393 1074 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 RABEP1Q15276 862 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 STXBP5Q5T5C0 1151 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 MCTP1Q6DN14 999 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 OVOS1Q6IE37 1185 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 CD302Q8IX05 232 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 GPR161Q8N6U8 529 aaKnown RBP12.75□□□□□ -0.37
CLIP3-204ENST00000590559 FAM3CQ92520 227 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 PSMG2Q969U7 264 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 TMX3Q96JJ7 454 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 PGLYRP2Q96PD5 576 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 TMEM209Q96SK2 561 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 HINFPQ9BQA5 517 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 LMAN1LQ9HAT1 526 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 NDRG2Q9UN36 371 aaKnown RBP12.75□□□□□ -0.37
CLIP3-204ENST00000590559 ASB3Q9Y575 518 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 STYXL1Q9Y6J8 313 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 ZFHX4Q86UP3 3567 aa12.75□□□□□ -0.37
CLIP3-204ENST00000590559 RALGAPA1Q6GYQ0 2036 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 ZNF263O14978 683 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 HNRNPDLO14979 420 aaKnown RBP12.74□□□□□ -0.37
CLIP3-204ENST00000590559 XPOTO43592 962 aaKnown RBP12.74□□□□□ -0.37
CLIP3-204ENST00000590559 TRAK2O60296 914 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 PAPSS2O95340 614 aaPredicted RBP12.74□□□□□ -0.37
CLIP3-204ENST00000590559 LIG4P49917 911 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 GRIN1Q05586 938 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 RSPO4Q2I0M5 234 aaPredicted RBP12.74□□□□□ -0.37
CLIP3-204ENST00000590559 C9orf57Q5W0N0 161 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 JADE1Q6IE81 842 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 DNAJB7Q7Z6W7 309 aaPredicted RBP12.74□□□□□ -0.37
CLIP3-204ENST00000590559 GPBP1Q86WP2 473 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 TTC9BQ8N6N2 239 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 ATAD1Q8NBU5 361 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 OR10T2Q8NGX3 314 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 RAD54LQ92698 747 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 MSANTD3Q96H12 275 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 CDK5RAP3Q96JB5 506 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 SENP8Q96LD8 212 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 ST6GALNAC4Q9H4F1 302 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 RPF1Q9H9Y2 349 aaKnown RBP12.74□□□□□ -0.37
CLIP3-204ENST00000590559 PARVGQ9HBI0 331 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 OBP2AQ9NY56 170 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 NCDNQ9UBB6 729 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 SLC27A5Q9Y2P5 690 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 DERAQ9Y315 318 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 EML5Q05BV3 1969 aa12.74□□□□□ -0.37
CLIP3-204ENST00000590559 ZNF638Q14966 1978 aaKnown RBP12.74□□□□□ -0.37
CLIP3-204ENST00000590559 MYBPHLA2RUH7 354 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 ANKRD63C9JTQ0 380 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 NFICP08651 508 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 CCNE1P24864 410 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 MATR3P43243 847 aaKnown RBP eCLIP12.73□□□□□ -0.37
CLIP3-204ENST00000590559 ALDH1A3P47895 512 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 EPHB3P54753 998 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 NRLP54845 237 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 POU5F1Q01860 360 aaKnown RBP12.73□□□□□ -0.37
CLIP3-204ENST00000590559 MCM6Q14566 821 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 C1orf228Q6PIY5 440 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 CRELD2Q6UXH1 353 aaPredicted RBP12.73□□□□□ -0.37
CLIP3-204ENST00000590559 DSTYKQ6XUX3 929 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 USP37Q86T82 979 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 ARID3BQ8IVW6 561 aaPredicted RBP12.73□□□□□ -0.37
CLIP3-204ENST00000590559 MYCT1Q8N699 235 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 BICD1Q96G01 975 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 MSTO1Q9BUK6 570 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 STRA6Q9BX79 667 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 CCSER1Q9C0I3 900 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 ZCWPW1Q9H0M4 648 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 ASB7Q9H672 318 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms