RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 MCF2L2Q86YR7 1114 aa8.91□□□□□ -0.98
SMAD4-209ENST00000589941 SMC5Q8IY18 1101 aa8.91□□□□□ -0.98
SMAD4-209ENST00000589941 CASP10Q92851 521 aa8.91□□□□□ -0.98
SMAD4-209ENST00000589941 DHRS1Q96LJ7 313 aa8.91□□□□□ -0.98
SMAD4-209ENST00000589941 SPATA33Q96N06 139 aa8.91□□□□□ -0.98
SMAD4-209ENST00000589941 HDAC8Q9BY41 377 aa8.91□□□□□ -0.98
SMAD4-209ENST00000589941 IL17RBQ9NRM6 502 aa8.91□□□□□ -0.98
SMAD4-209ENST00000589941 PAG1Q9NWQ8 432 aa8.91□□□□□ -0.98
SMAD4-209ENST00000589941 DUSP13Q9UII6 198 aa8.91□□□□□ -0.98
SMAD4-209ENST00000589941 PCDHB10Q9UN67 800 aa8.91□□□□□ -0.98
SMAD4-209ENST00000589941 COL4A2P08572 1712 aa8.91□□□□□ -0.98
SMAD4-209ENST00000589941 CLASP2O75122 1294 aaKnown RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 TP53P04637 393 aaPredicted RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 TSPY3P0CV98 308 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 TSPY8P0CW00 308 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 SCG2P13521 617 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 TRIM27P14373 513 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 EPCAMP16422 314 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 DDIT3P35638 169 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 TFAP4Q01664 338 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 ARID5AQ03989 594 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 AUHQ13825 339 aaKnown RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 PPP2R5EQ16537 467 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 CLEC16AQ2KHT3 1053 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 CELF3Q5SZQ8 465 aaKnown RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 AXDND1Q5T1B0 1012 aaPredicted RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 SPOUT1Q5T280 376 aaKnown RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 L1TD1Q5T7N2 865 aaKnown RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 ZKSCAN2Q63HK3 967 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 TSSK4Q6SA08 328 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 LRSAM1Q6UWE0 723 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 BTNL9Q6UXG8 535 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 TSHZ1Q6ZSZ6 1077 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 TMPRSS7Q7RTY8 843 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 C19orf47Q8N9M1 422 aaKnown RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 LRRN4CLQ8ND94 238 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 ST13P5Q8NFI4 369 aaPredicted RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 PJA1Q8NG27 643 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 IL31RAQ8NI17 732 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 SYTL5Q8TDW5 730 aaPredicted RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 STRBPQ96SI9 672 aaKnown RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 MPHOSPH6Q99547 160 aaKnown RBP8.9□□□□□ -0.98
SMAD4-209ENST00000589941 CPVLQ9H3G5 476 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 TMX1Q9H3N1 280 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 CWH43Q9H720 699 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 STX8Q9UNK0 236 aa8.9□□□□□ -0.98
SMAD4-209ENST00000589941 EVPLQ92817 2033 aa8.9□□□□□ -0.99
SMAD4-209ENST00000589941 CCDC171Q6TFL3 1326 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 C2orf71A6NGG8 1288 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 SRRM3A6NNA2 597 aaPredicted RBP8.89□□□□□ -0.99
SMAD4-209ENST00000589941 TBKBP1A7MCY6 615 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 TAF4O00268 1085 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 MGEA5O60502 916 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 SSBP05455 408 aaKnown RBP eCLIP8.89□□□□□ -0.99
SMAD4-209ENST00000589941 ETFBP38117 255 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 IRAK1P51617 712 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 FAM102BQ5T8I3 360 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 TMC5Q6UXY8 1006 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 ZNF444Q8N0Y2 327 aaPredicted RBP8.89□□□□□ -0.99
SMAD4-209ENST00000589941 ZBTB44Q8NCP5 570 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 MRPS27Q92552 414 aaKnown RBP8.89□□□□□ -0.99
SMAD4-209ENST00000589941 UPF2Q9HAU5 1272 aaKnown RBP8.89□□□□□ -0.99
SMAD4-209ENST00000589941 ARHGEF3Q9NR81 526 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 WNT16Q9UBV4 365 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 SIT1Q9Y3P8 196 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 PCDHB12Q9Y5F1 795 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 CDY2AQ9Y6F7 541 aa8.89□□□□□ -0.99
SMAD4-209ENST00000589941 WDR19Q8NEZ3 1342 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 PPFIA4O75335 1185 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 PRAMEF1O95521 474 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 CSTF1Q05048 431 aaKnown RBP8.88□□□□□ -0.99
SMAD4-209ENST00000589941 UBE3CQ15386 1083 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 STXBP2Q15833 593 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 DCAF4Q8WV16 495 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 AUTS2Q8WXX7 1259 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 BOLA2Q9H3K6 86 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 TYW1Q9NV66 732 aaKnown RBP8.88□□□□□ -0.99
SMAD4-209ENST00000589941 C19orf73Q9NVV2 129 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 SPATA6Q9NWH7 488 aaPredicted RBP8.88□□□□□ -0.99
SMAD4-209ENST00000589941 GFOD1Q9NXC2 390 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 DDX19BQ9UMR2 479 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 MTF2Q9Y483 593 aaPredicted RBP8.88□□□□□ -0.99
SMAD4-209ENST00000589941 PCDHGA2Q9Y5H1 932 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 EML5Q05BV3 1969 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 WDR81Q562E7 1941 aa8.88□□□□□ -0.99
SMAD4-209ENST00000589941 MTCL1Q9Y4B5 1905 aaKnown RBP8.88□□□□□ -0.99
SMAD4-209ENST00000589941 NRCAMQ92823 1304 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 SPAG17Q6Q759 2223 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 M0R2C6 588 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 SMAD7O15105 426 aaKnown RBP8.87□□□□□ -0.99
SMAD4-209ENST00000589941 SIGLEC6O43699 453 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 TOP3BO95985 862 aaKnown RBP8.87□□□□□ -0.99
SMAD4-209ENST00000589941 FGFR1P11362 822 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 TDO2P48775 406 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 EGR3Q06889 387 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 TMEM62Q0P6H9 643 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 TMEM266Q2M3C6 531 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 ZNF528Q3MIS6 628 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 SOWAHCQ53LP3 525 aaPredicted RBP8.87□□□□□ -0.99
SMAD4-209ENST00000589941 RALGPS1Q5JS13 557 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms