RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 ZBTB6Q15916 424 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 ARHGAP44Q17R89 818 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 DUOXA2Q1HG44 320 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 JADE1Q6IE81 842 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 SPOPLQ6IQ16 392 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 SHC3Q92529 594 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 PGBD4Q96DM1 585 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 SNX27Q96L92 541 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 ACAP3Q96P50 834 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 SPAG5Q96R06 1193 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 YME1L1Q96TA2 773 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 XYLT2Q9H1B5 865 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 CWH43Q9H720 699 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 TBC1D13Q9NVG8 400 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 ZNHIT6Q9NWK9 470 aaKnown RBP11.23□□□□□ -0.61
VPS4B-204ENST00000589604 DNAJB4Q9UDY4 337 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 EIF3CLB5ME19 914 aaKnown RBP11.22□□□□□ -0.61
VPS4B-204ENST00000589604 F8W810 466 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 ASS1P00966 412 aaKnown RBP11.22□□□□□ -0.61
VPS4B-204ENST00000589604 SKIP12755 728 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 STAT1P42224 750 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 ARID5AQ03989 594 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 NCOA4Q13772 614 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 ASIC2Q16515 512 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 XKR4Q5GH76 650 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 NOMO2Q5JPE7 1267 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 GLRA4Q5JXX5 417 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 NYAP1Q6ZVC0 841 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 ZNF571Q7Z3V5 609 aaPredicted RBP11.22□□□□□ -0.61
VPS4B-204ENST00000589604 C1orf127Q8N9H9 656 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 NT5C1BQ96P26 610 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 EIF3CQ99613 913 aaKnown RBP11.22□□□□□ -0.61
VPS4B-204ENST00000589604 C17orf80Q9BSJ5 609 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 HAUS4Q9H6D7 363 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 PLEKHA5Q9HAU0 1116 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 NENFQ9UMX5 172 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 GIT1Q9Y2X7 761 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 INSL6Q9Y581 213 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 NUB1Q9Y5A7 615 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 TDRD15B5MCY1 1934 aaKnown RBP11.22□□□□□ -0.61
VPS4B-204ENST00000589604 NLRC5Q86WI3 1866 aa11.22□□□□□ -0.61
VPS4B-204ENST00000589604 EPOPA6NHQ4 379 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 GFPT2O94808 682 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 ABL1P00519 1130 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 CLCN1P35523 988 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 PIK3CAP42336 1068 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 MYL6P60660 151 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 TFAMQ00059 246 aaKnown RBP11.21□□□□□ -0.61
VPS4B-204ENST00000589604 GCNT1Q02742 428 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 PTK2Q05397 1052 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 SOX4Q06945 474 aaPredicted RBP11.21□□□□□ -0.61
VPS4B-204ENST00000589604 BIRC3Q13489 604 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 BTG3Q14201 252 aaPredicted RBP11.21□□□□□ -0.61
VPS4B-204ENST00000589604 GLB1LQ6UWU2 654 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 FAM71AQ8IYT1 594 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 CMTR2Q8IYT2 770 aaKnown RBP11.21□□□□□ -0.61
VPS4B-204ENST00000589604 PPM1KQ8N3J5 372 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 UBR7Q8N806 425 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 BCL7CQ8WUZ0 217 aaPredicted RBP11.21□□□□□ -0.61
VPS4B-204ENST00000589604 RABGGTAQ92696 567 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 C18orf25Q96B23 403 aaPredicted RBP11.21□□□□□ -0.61
VPS4B-204ENST00000589604 PAAF1Q9BRP4 392 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 CCDC94Q9BW85 323 aaPredicted RBP11.21□□□□□ -0.61
VPS4B-204ENST00000589604 TTYH1Q9H313 450 aaPredicted RBP11.21□□□□□ -0.61
VPS4B-204ENST00000589604 NRDE2Q9H7Z3 1164 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 C2CD2Q9Y426 696 aa11.21□□□□□ -0.61
VPS4B-204ENST00000589604 SMIM28A0A1B0GU29 152 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 RCCD1A6NED2 376 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 FERP16591 822 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 ACO1P21399 889 aaKnown RBP11.2□□□□□ -0.62
VPS4B-204ENST00000589604 ARHGAP25P42331 645 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 PSEN1P49768 467 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 GUCY2FP51841 1108 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 KIF11P52732 1056 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 CYP27A1Q02318 531 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 KLHL30Q0D2K2 578 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 APBB1IPQ7Z5R6 666 aaPredicted RBP11.2□□□□□ -0.62
VPS4B-204ENST00000589604 TMEM173Q86WV6 379 aaPredicted RBP11.2□□□□□ -0.62
VPS4B-204ENST00000589604 CD302Q8IX05 232 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 SLC30A5Q8TAD4 765 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 CLP1Q92989 425 aaKnown RBP11.2□□□□□ -0.62
VPS4B-204ENST00000589604 ANKRD36BP1Q96IX9 119 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 CCDC42Q96M95 316 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 PPP1R10Q96QC0 940 aaKnown RBP11.2□□□□□ -0.62
VPS4B-204ENST00000589604 CERS4Q9HA82 394 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 GOLGA2P5Q9HBQ8 144 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 PLSCR2Q9NRY7 297 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 CNTN3Q9P232 1028 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 MTUS1Q9ULD2 1270 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 A0A087X0T9 212 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 NT5C1B-RDH14C9J2C7 533 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 HOXA2O43364 376 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 PHACTR2O75167 634 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 TNNC2P02585 160 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 CCDC175P0C221 793 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 TMEM191BP0C7N4 346 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 FAM228BP0C875 321 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 CYLC1P35663 651 aaPredicted RBP11.2□□□□□ -0.62
VPS4B-204ENST00000589604 MFAP3P55082 362 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 NOP14P78316 857 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms