RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 STK24Q9Y6E0 443 aa12.65□□□□□ -0.38
LIG3-207ENST00000586119 CHURC1-FNTBB4DL54 471 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 LAD1O00515 517 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 HRO43593 1189 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 CLTAP09496 248 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 FNTBP49356 437 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 AARSP49588 968 aaKnown RBP eCLIP12.64□□□□□ -0.39
LIG3-207ENST00000586119 SMTNP53814 917 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 NCKAP1LP55160 1127 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 GRIN1Q05586 938 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 SPEM2Q0P670 501 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 GPR17Q13304 367 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 TMEM119Q4V9L6 283 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 SLC39A4Q6P5W5 647 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 Q6ZS52 159 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 DNAJB7Q7Z6W7 309 aaPredicted RBP12.64□□□□□ -0.39
LIG3-207ENST00000586119 ARID3BQ8IVW6 561 aaPredicted RBP12.64□□□□□ -0.39
LIG3-207ENST00000586119 BICD1Q96G01 975 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 PLEKHA5Q9HAU0 1116 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 TRPV4Q9HBA0 871 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 USP18Q9UMW8 372 aa12.64□□□□□ -0.39
LIG3-207ENST00000586119 ZNF638Q14966 1978 aaKnown RBP12.63□□□□□ -0.39
LIG3-207ENST00000586119 TCHHQ07283 1943 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 MTMR11A4FU01 709 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 TISP43B9A030 160 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 ANKRD63C9JTQ0 380 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 CD2BP2O95400 341 aaKnown RBP12.63□□□□□ -0.39
LIG3-207ENST00000586119 MCM6Q14566 821 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 HEATR6Q6AI08 1181 aaKnown RBP12.63□□□□□ -0.39
LIG3-207ENST00000586119 SCARA3Q6AZY7 606 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 JADE1Q6IE81 842 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 PRR23BQ6ZRT6 265 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 OR10T2Q8NGX3 314 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 DEPDC1BQ8WUY9 529 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 SENP8Q96LD8 212 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 CNTNAP3BQ96NU0 1288 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 LPIN3Q9BQK8 851 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 REEP2Q9BRK0 252 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 TIPINQ9BVW5 301 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 CNTNAP3Q9BZ76 1288 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 SMG9Q9H0W8 520 aaKnown RBP12.63□□□□□ -0.39
LIG3-207ENST00000586119 TRPV5Q9NQA5 729 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 BLOC1S4Q9NUP1 217 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 GTSE1Q9NYZ3 720 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 DAXXQ9UER7 740 aaPredicted RBP12.63□□□□□ -0.39
LIG3-207ENST00000586119 TBX20Q9UMR3 447 aa12.63□□□□□ -0.39
LIG3-207ENST00000586119 UBQLN1Q9UMX0 589 aaKnown RBP12.63□□□□□ -0.39
LIG3-207ENST00000586119 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.63□□□□□ -0.39
LIG3-207ENST00000586119 TPRP12270 2363 aaKnown RBP12.63□□□□□ -0.39
LIG3-207ENST00000586119 DENND4CQ5VZ89 1909 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 ADRB2P07550 413 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 NFICP08651 508 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 CYP3A5P20815 502 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 GABRR2P28476 465 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 NMT1P30419 496 aaKnown RBP12.62□□□□□ -0.39
LIG3-207ENST00000586119 CXCL12P48061 93 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 ACOT2P49753 483 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 LIG4P49917 911 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 EPHB3P54753 998 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 LILRA4P59901 499 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 CYP4F8P98187 520 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 PPP2R3AQ06190 1150 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 TNK2Q07912 1038 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 SPATA1Q5VX52 437 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 OVOS1Q6IE37 1185 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 USP37Q86T82 979 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 LRRTM3Q86VH5 581 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 MYCT1Q8N699 235 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 CSGALNACT1Q8TDX6 532 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 GIPC2Q8TF65 315 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 FIZ1Q96SL8 496 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 ATXN3LQ9H3M9 355 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 RPF1Q9H9Y2 349 aaKnown RBP12.62□□□□□ -0.39
LIG3-207ENST00000586119 POLR3BQ9NW08 1133 aaPredicted RBP12.62□□□□□ -0.39
LIG3-207ENST00000586119 MAFFQ9ULX9 164 aa12.62□□□□□ -0.39
LIG3-207ENST00000586119 NUP210Q8TEM1 1887 aaPredicted RBP12.61□□□□□ -0.39
LIG3-207ENST00000586119 TSC2P49815 1807 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 A0A0B4J269 797 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 OR6C75A6NL08 312 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 SPECC1L-ADORA2AF8WAN1 911 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 K7ESF4 209 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 PIRO00625 290 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 OGTO15294 1046 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 CHADO15335 359 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 KRT37O76014 449 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 PRAMEF12O95522 483 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 ALDH1A3P47895 512 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 CCR3P51677 355 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 KPNA1P52294 538 aaPredicted RBP12.61□□□□□ -0.39
LIG3-207ENST00000586119 PON2Q15165 354 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 RABEP1Q15276 862 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 ZC2HC1CQ53FD0 456 aaPredicted RBP12.61□□□□□ -0.39
LIG3-207ENST00000586119 RILPL1Q5EBL4 403 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 GPR158Q5T848 1215 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 C9orf57Q5W0N0 161 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 PKN3Q6P5Z2 889 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 MAMSTRQ6ZN01 415 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 GPBP1Q86WP2 473 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 YAF2Q8IY57 180 aa12.61□□□□□ -0.39
LIG3-207ENST00000586119 LEMD2Q8NC56 503 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms