RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 APOBEC3GQ9HC16 384 aaKnown RBP19.52■□□□□ 0.72
CCDC40-213ENST00000574933 NGRNQ9NPE2 291 aaKnown RBP19.52■□□□□ 0.72
CCDC40-213ENST00000574933 DSEQ9UL01 958 aa19.52■□□□□ 0.72
CCDC40-213ENST00000574933 SSX2IPQ9Y2D8 614 aa19.52■□□□□ 0.72
CCDC40-213ENST00000574933 SNX9Q9Y5X1 595 aa19.52■□□□□ 0.72
CCDC40-213ENST00000574933 PTPRDP23468 1912 aa19.52■□□□□ 0.72
CCDC40-213ENST00000574933 PLXNA3P51805 1871 aa19.52■□□□□ 0.71
CCDC40-213ENST00000574933 LGALS16A8MUM7 142 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 TACC1O75410 805 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 OAZ2O95190 189 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 ODC1P11926 461 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 TKTP29401 623 aaKnown RBP19.51■□□□□ 0.71
CCDC40-213ENST00000574933 GLUD2P49448 558 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 ERVFC1P60507 584 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 SOWAHAQ2M3V2 549 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 RTP2Q5QGT7 225 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 PDXDC1Q6P996 788 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 GBP6Q6ZN66 633 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 CCDC150Q8NCX0 1101 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 MRPL38Q96DV4 380 aaKnown RBP19.51■□□□□ 0.71
CCDC40-213ENST00000574933 PI4K2AQ9BTU6 479 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 BCO2Q9BYV7 579 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 FAM124BQ9H5Z6 455 aaPredicted RBP19.51■□□□□ 0.71
CCDC40-213ENST00000574933 RXFP1Q9HBX9 757 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 L1RE1Q9UN81 338 aa19.51■□□□□ 0.71
CCDC40-213ENST00000574933 RFXAPO00287 272 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 TBC1D4O60343 1298 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 HUS1O60921 280 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 URODP06132 367 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 P4HA1P13674 534 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 TNNC1P63316 161 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 BMS1Q14692 1282 aaKnown RBP19.5■□□□□ 0.71
CCDC40-213ENST00000574933 PTPN14Q15678 1187 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 PTPROQ16827 1216 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 EXOC3L4Q17RC7 722 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 WDR44Q5JSH3 913 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 SMYD5Q6GMV2 418 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 DPY19L2P1Q6NXN4 242 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 ANKS3Q6ZW76 656 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 LNX1Q8TBB1 728 aaPredicted RBP19.5■□□□□ 0.71
CCDC40-213ENST00000574933 NIF3L1Q9GZT8 377 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 PRDM12Q9H4Q4 367 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 GCNT4Q9P109 453 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 FNIP2Q9P278 1114 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 BACE2Q9Y5Z0 518 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 MYH10P35580 1976 aa19.5■□□□□ 0.71
CCDC40-213ENST00000574933 A0A1B0GTH6 734 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 GABRDO14764 452 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 PON1P27169 355 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 ASPAP45381 313 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 FANCCQ00597 558 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 KCNMA1Q12791 1236 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 SMC1AQ14683 1233 aaKnown RBP19.49■□□□□ 0.71
CCDC40-213ENST00000574933 VARS2Q5ST30 1063 aaKnown RBP19.49■□□□□ 0.71
CCDC40-213ENST00000574933 WSCD1Q658N2 575 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 SPOPLQ6IQ16 392 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 TMC7Q7Z402 723 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 PDCL2Q8N4E4 241 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 MRPL43Q8N983 215 aaKnown RBP19.49■□□□□ 0.71
CCDC40-213ENST00000574933 RNF214Q8ND24 703 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 NT5C1BQ96P26 610 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 ERGIC2Q96RQ1 377 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 TCF25Q9BQ70 676 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 CRACR2AQ9BSW2 395 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 OXCT2Q9BYC2 517 aaPredicted RBP19.49■□□□□ 0.71
CCDC40-213ENST00000574933 INTS2Q9H0H0 1204 aaKnown RBP19.49■□□□□ 0.71
CCDC40-213ENST00000574933 RBSNQ9H1K0 784 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 CYP3A43Q9HB55 503 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 RTN4Q9NQC3 1192 aaKnown RBP19.49■□□□□ 0.71
CCDC40-213ENST00000574933 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.49■□□□□ 0.71
CCDC40-213ENST00000574933 MRPL17Q9NRX2 175 aaKnown RBP19.49■□□□□ 0.71
CCDC40-213ENST00000574933 MTRRQ9UBK8 725 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 NXF1Q9UBU9 619 aaKnown RBP19.49■□□□□ 0.71
CCDC40-213ENST00000574933 POLIQ9UNA4 740 aa19.49■□□□□ 0.71
CCDC40-213ENST00000574933 C2orf71A6NGG8 1288 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 H7C4K7 107 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 WARSP23381 471 aaKnown RBP19.48■□□□□ 0.71
CCDC40-213ENST00000574933 IRS1P35568 1242 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 CREMQ03060 361 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 YWHAHQ04917 246 aaPredicted RBP19.48■□□□□ 0.71
CCDC40-213ENST00000574933 FKBP15Q5T1M5 1219 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 OVOS1Q6IE37 1185 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 KIAA1841Q6NSI8 718 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 TRIM65Q6PJ69 517 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 CEP57Q86XR8 500 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 KBTBD7Q8WVZ9 684 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 RIN2Q8WYP3 895 aaPredicted RBP19.48■□□□□ 0.71
CCDC40-213ENST00000574933 TATDN2Q93075 761 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 B3GALT6Q96L58 329 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 ENTPD7Q9NQZ7 604 aa19.48■□□□□ 0.71
CCDC40-213ENST00000574933 CXCL14O95715 111 aa19.47■□□□□ 0.71
CCDC40-213ENST00000574933 C1RP00736 705 aa19.47■□□□□ 0.71
CCDC40-213ENST00000574933 SLC9A1P19634 815 aa19.47■□□□□ 0.71
CCDC40-213ENST00000574933 LHX1P48742 406 aa19.47■□□□□ 0.71
CCDC40-213ENST00000574933 GCNT1Q02742 428 aa19.47■□□□□ 0.71
CCDC40-213ENST00000574933 NR1I3Q14994 352 aa19.47■□□□□ 0.71
CCDC40-213ENST00000574933 PSMD5Q16401 504 aa19.47■□□□□ 0.71
CCDC40-213ENST00000574933 FILIP1LQ4L180 1135 aa19.47■□□□□ 0.71
CCDC40-213ENST00000574933 ZNF280DQ6N043 979 aa19.47■□□□□ 0.71
CCDC40-213ENST00000574933 METTL23Q86XA0 190 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms