RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 NDUFAF2Q8N183 169 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 NETO2Q8NC67 525 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 FAM151AQ8WW52 585 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 ORAI3Q9BRQ5 295 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 CELF4Q9BZC1 486 aaKnown RBP6.9□□□□□ -1.3
VPS53-212ENST00000572259 DCTPP1Q9H773 170 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 CABP5Q9NP86 173 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 KMT5AQ9NQR1 393 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 PDP2Q9P2J9 529 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.9□□□□□ -1.3
VPS53-212ENST00000572259 DBNLQ9UJU6 430 aaKnown RBP6.9□□□□□ -1.3
VPS53-212ENST00000572259 ISY1Q9ULR0 285 aaKnown RBP6.9□□□□□ -1.3
VPS53-212ENST00000572259 SCAF8Q9UPN6 1271 aaKnown RBP6.9□□□□□ -1.3
VPS53-212ENST00000572259 PCDHAC2Q9Y5I4 1007 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 GPR75-ASB3A0A0A6YYF3 556 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 ZC3H12DA2A288 527 aaKnown RBP6.89□□□□□ -1.31
VPS53-212ENST00000572259 OR14I1A6ND48 311 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 M0R2C6 588 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 HGSO14964 777 aaPredicted RBP6.89□□□□□ -1.31
VPS53-212ENST00000572259 TMCC2O75069 709 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 ENTPD3O75355 529 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 IDH1O75874 414 aaKnown RBP6.89□□□□□ -1.31
VPS53-212ENST00000572259 IL33O95760 270 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 ZBED1O96006 694 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 CFBP00751 764 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 CKMP06732 381 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 DBHP09172 617 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 SDHBP21912 280 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 CHKAP35790 457 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 BTDP43251 543 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 CTCFP49711 727 aaPredicted RBP6.89□□□□□ -1.31
VPS53-212ENST00000572259 CLK1P49759 484 aaKnown RBP6.89□□□□□ -1.31
VPS53-212ENST00000572259 INHBEP58166 350 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 ERVFRD-1P60508 538 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 TMEM62Q0P6H9 643 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 SREBF2Q12772 1141 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 SART3Q15020 963 aaKnown RBP6.89□□□□□ -1.31
VPS53-212ENST00000572259 STEAP3Q658P3 488 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 FAAH2Q6GMR7 532 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 OTUD7BQ6GQQ9 843 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 ABHD17CQ6PCB6 329 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 MPZL3Q6UWV2 235 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 DLK2Q6UY11 383 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 SKAP1Q86WV1 359 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 KIF18BQ86Y91 864 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 CISD2Q8N5K1 135 aaKnown RBP6.89□□□□□ -1.31
VPS53-212ENST00000572259 DEPTORQ8TB45 409 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 PIP4K2CQ8TBX8 421 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 SEC14L1Q92503 715 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 NSUN4Q96CB9 384 aaKnown RBP6.89□□□□□ -1.31
VPS53-212ENST00000572259 ZBTB10Q96DT7 871 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 PEX11GQ96HA9 241 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 CDHR1Q96JP9 859 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 CCDC138Q96M89 665 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 MYLK2Q9H1R3 596 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 RWDD1Q9H446 243 aaPredicted RBP6.89□□□□□ -1.31
VPS53-212ENST00000572259 RSAD1Q9HA92 442 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 RXFP1Q9HBX9 757 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 TNFRSF12AQ9NP84 129 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 TPCN1Q9ULQ1 816 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 LRCH1Q9Y2L9 728 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 GPR52Q9Y2T5 361 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 SLC4A7Q9Y6M7 1214 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 MROH7-TTC4A0A0A0MT08 1334 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 GAKO14976 1311 aa6.89□□□□□ -1.31
VPS53-212ENST00000572259 MYO5AQ9Y4I1 1855 aaKnown RBP6.88□□□□□ -1.31
VPS53-212ENST00000572259 TPP1O14773 563 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 ULK1O75385 1050 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 BAIAP3O94812 1187 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 HRGP04196 525 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 ZBTB48P10074 688 aaPredicted RBP6.88□□□□□ -1.31
VPS53-212ENST00000572259 PDE6AP16499 860 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 ATP5JP18859 108 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 KRT15P19012 456 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 TSPAN7P41732 249 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 KIF23Q02241 960 aaPredicted RBP6.88□□□□□ -1.31
VPS53-212ENST00000572259 TCP10Q12799 353 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 SEPT2Q15019 361 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 PCBP2Q15366 365 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS53-212ENST00000572259 GPR19Q15760 415 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 TMEM177Q53S58 311 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 ZSCAN25Q6NSZ9 544 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 B3GNT9Q6UX72 402 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 OSTM1Q86WC4 334 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 MSL3Q8N5Y2 521 aaKnown RBP6.88□□□□□ -1.31
VPS53-212ENST00000572259 C1orf162Q8NEQ5 155 aaPredicted RBP6.88□□□□□ -1.31
VPS53-212ENST00000572259 NUP133Q8WUM0 1156 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 FAM168AQ92567 244 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 TAAR9Q96RI9 348 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 IDI2Q9BXS1 227 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 AP1M1Q9BXS5 423 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 ZNF341Q9BYN7 854 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 WDR12Q9GZL7 423 aaKnown RBP6.88□□□□□ -1.31
VPS53-212ENST00000572259 TMEM39BQ9GZU3 492 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 FAM204AQ9H8W3 233 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 ARFGAP3Q9NP61 516 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 SLC6A20Q9NP91 592 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 SMYD2Q9NRG4 433 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 TBC1D22BQ9NU19 505 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 RRN3Q9NYV6 651 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms