RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CDK5RAP1Q96SZ6 601 aaKnown RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 FYCO1Q9BQS8 1478 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 ORAI3Q9BRQ5 295 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 PLA2G12BQ9BX93 195 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 ANKRD30BQ9BXX2 1392 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 KRTAP4-9Q9BYQ8 210 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 UACAQ9BZF9 1416 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 NACAP1Q9BZK3 213 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 TNMDQ9H2S6 317 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 MRPL46Q9H2W6 279 aaKnown RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 VCX3BQ9H321 246 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 TSPY26PQ9H489 355 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 MTG2Q9H4K7 406 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 RABEP2Q9H5N1 569 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 ZMAT4Q9H898 229 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 AS3MTQ9HBK9 375 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 ZNF304Q9HCX3 659 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.57□□□□□ -1.84
VPS35-208ENST00000568612 POLR3BQ9NW08 1133 aaPredicted RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 ZNHIT6Q9NWK9 470 aaKnown RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 DCAF16Q9NXF7 216 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 SEPT10Q9P0V9 454 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 NCDNQ9UBB6 729 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 ZNF215Q9UL58 517 aaPredicted RBP3.57□□□□□ -1.84
VPS35-208ENST00000568612 PYCARDQ9ULZ3 195 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 USP18Q9UMW8 372 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 SSX2IPQ9Y2D8 614 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 SQORQ9Y6N5 450 aa3.57□□□□□ -1.84
VPS35-208ENST00000568612 LAMC1P11047 1609 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 CAMSAP2Q08AD1 1489 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 PLB1Q6P1J6 1458 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 BLMP54132 1417 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 ERBINQ96RT1 1412 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 LINC00854A0A1B0GVQ3 168 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 A0A1W2PRX2 142 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 DYTNA2CJ06 578 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 GOLGA6L4A6NEF3 574 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 GSG1L2A8MUP6 293 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 MATN2O00339 956 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 MUSKO15146 869 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 SLC26A4O43511 780 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 TGM5O43548 720 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 FSBPO95073 299 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 SLU7O95391 586 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 LDHCP07864 332 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 HSPA1AP0DMV8 641 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 HSPA1BP0DMV9 641 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 HSPA8P11142 646 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 HNRNPLP14866 589 aaKnown RBP eCLIP3.56□□□□□ -1.84
VPS35-208ENST00000568612 EZRP15311 586 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 COMTP21964 271 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 PRKAR2BP31323 418 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 S100A5P33763 92 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 MSX2P35548 267 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 RPS19P39019 145 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 ADCYAP1R1P41586 468 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 LSSP48449 732 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 AMPHP49418 695 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 PEX5P50542 639 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 BPIFB4P59827 614 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 TUBA1BP68363 451 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 IGBP1P78318 339 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 SMAD3P84022 425 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 GUCY1B3Q02153 619 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 ITIH3Q06033 890 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 COX10Q12887 443 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 STRN3Q13033 797 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 NFYCQ13952 458 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 KCNB1Q14721 858 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 WTAPQ15007 396 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 PPP2R5BQ15173 497 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 INAQ16352 499 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 LONRF1Q17RB8 773 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 RABL6Q3YEC7 729 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 ATP13A4Q4VNC1 1196 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 BOLA3Q53S33 107 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 CCDC122Q5T0U0 273 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 CFAP58Q5T655 872 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 CAPRIN2Q6IMN6 1127 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 CCSAPQ6IQ19 270 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 NAA16Q6N069 864 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 KIAA1841Q6NSI8 718 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 MIS18BP1Q6P0N0 1132 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 CWC27Q6UX04 472 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 NCCRP1Q6ZVX7 275 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 TUBA1AQ71U36 451 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 HDGFL2Q7Z4V5 671 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 ZNF804AQ7Z570 1209 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 NANOGNBQ7Z5D8 188 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 BMP8AQ7Z5Y6 402 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 GGNQ86UU5 652 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 CCDC50Q8IVM0 306 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 BCL6BQ8N143 479 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 DCLK2Q8N568 766 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 TTC39CQ8N584 583 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 ANKRD53Q8N9V6 530 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 ZBTB8BQ8NAP8 495 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 SHCBP1Q8NEM2 672 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 DNERQ8NFT8 737 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 SVIPQ8NHG7 77 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms