RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 KDM7AQ6ZMT4 941 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 WDTC1Q8N5D0 677 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 FEZF2Q8TBJ5 459 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 C16orf70Q9BSU1 422 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 RPF1Q9H9Y2 349 aaKnown RBP21.55■■□□□ 1.04
CLN3-230ENST00000568076 PARVAQ9NVD7 372 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.55■■□□□ 1.04
CLN3-230ENST00000568076 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.55■■□□□ 1.04
CLN3-230ENST00000568076 CCL15-CCL14A0A0B4J2E2 113 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 HMGB1P1B2RPK0 211 aaPredicted RBP21.54■■□□□ 1.04
CLN3-230ENST00000568076 PSTPIP1O43586 416 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 SNAI1O95863 264 aaPredicted RBP21.54■■□□□ 1.04
CLN3-230ENST00000568076 NFICP08651 508 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 MYZAPP0CAP1 466 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 CETPP11597 493 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 PHKA2P46019 1235 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 CCL15Q16663 113 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 BRI3BPQ8WY22 251 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 ATG4AQ8WYN0 398 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 SLCO2A1Q92959 643 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 ECEL1O95672 775 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 LSM8O95777 96 aaKnown RBP21.54■■□□□ 1.04
CLN3-230ENST00000568076 VTNP04004 478 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 NR1D1P20393 614 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 GNGT1P63211 74 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 SPDYCQ5MJ68 293 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 ANKS1BQ7Z6G8 1248 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 IFNLR1Q8IU57 520 aaPredicted RBP21.54■■□□□ 1.04
CLN3-230ENST00000568076 RHOT1Q8IXI2 618 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 C1orf127Q8N9H9 656 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.54■■□□□ 1.04
CLN3-230ENST00000568076 EMID1Q96A84 441 aaPredicted RBP21.54■■□□□ 1.04
CLN3-230ENST00000568076 PDZD7Q9H5P4 517 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 USTQ9Y2C2 406 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 R3HDM2Q9Y2K5 976 aaKnown RBP21.54■■□□□ 1.04
CLN3-230ENST00000568076 SLC45A1Q9Y2W3 748 aa21.54■■□□□ 1.04
CLN3-230ENST00000568076 ZSWIM8A7E2V4 1837 aa21.53■■□□□ 1.04
CLN3-230ENST00000568076 SCN4AP35499 1836 aa21.53■■□□□ 1.04
CLN3-230ENST00000568076 IQCA1LA6NCM1 817 aa21.53■■□□□ 1.04
CLN3-230ENST00000568076 GOLGA6L10A6NI86 522 aa21.53■■□□□ 1.04
CLN3-230ENST00000568076 LACTBL1A8MY62 500 aa21.53■■□□□ 1.04
CLN3-230ENST00000568076 IL18RAPO95256 599 aa21.53■■□□□ 1.04
CLN3-230ENST00000568076 STAG3L1P0CL83 205 aa21.53■■□□□ 1.04
CLN3-230ENST00000568076 SNX1Q13596 522 aa21.53■■□□□ 1.04
CLN3-230ENST00000568076 CPB2Q96IY4 423 aa21.53■■□□□ 1.04
CLN3-230ENST00000568076 NXF1Q9UBU9 619 aaKnown RBP21.53■■□□□ 1.04
CLN3-230ENST00000568076 AKT3Q9Y243 479 aa21.53■■□□□ 1.04
CLN3-230ENST00000568076 PASKQ96RG2 1323 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 TMEM191CA6NGB0 347 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 MAGEB2O15479 319 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 KRT19P08727 400 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 RALAP11233 206 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 MAN1A1P33908 653 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 RAP1GAPP47736 663 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 ZNF252P-AS1Q0IIN9 211 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 KLF1Q13351 362 aaPredicted RBP21.52■■□□□ 1.04
CLN3-230ENST00000568076 PDCLQ13371 301 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 KATNAL2Q8IYT4 538 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 CXorf38Q8TB03 319 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 ART4Q93070 314 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 DCLK3Q9C098 648 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 CENPHQ9H3R5 247 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 MORF4L1Q9UBU8 362 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 PCDHGC3Q9UN70 934 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 CLEC11AQ9Y240 323 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 TP73O15350 636 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 ERLIN2O94905 339 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 CALB1P05937 261 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 TCF4P15884 667 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 GBP1P32455 592 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 CDH5P33151 784 aaPredicted RBP21.52■■□□□ 1.04
CLN3-230ENST00000568076 GTF2A2P52657 109 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 PMS2P54278 862 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 UBAP2Q5T6F2 1119 aaKnown RBP21.52■■□□□ 1.04
CLN3-230ENST00000568076 JADE1Q6IE81 842 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 MTHFD1LQ6UB35 978 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 ZNF467Q7Z7K2 595 aaPredicted RBP21.52■■□□□ 1.04
CLN3-230ENST00000568076 PNMA8AQ86V59 439 aaPredicted RBP21.52■■□□□ 1.04
CLN3-230ENST00000568076 TMEM35BQ8NCS4 154 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 HEMGNQ9BXL5 484 aa21.52■■□□□ 1.04
CLN3-230ENST00000568076 EIF3HO15372 352 aaKnown RBP eCLIP21.51■■□□□ 1.03
CLN3-230ENST00000568076 STRNO43815 780 aa21.51■■□□□ 1.03
CLN3-230ENST00000568076 IVLP07476 585 aa21.51■■□□□ 1.03
CLN3-230ENST00000568076 MCF2P10911 925 aa21.51■■□□□ 1.03
CLN3-230ENST00000568076 ARF4P18085 180 aaPredicted RBP21.51■■□□□ 1.03
CLN3-230ENST00000568076 KRT17Q04695 432 aa21.51■■□□□ 1.03
CLN3-230ENST00000568076 CCDC50Q8IVM0 306 aa21.51■■□□□ 1.03
CLN3-230ENST00000568076 RNF25Q96BH1 459 aaPredicted RBP21.51■■□□□ 1.03
CLN3-230ENST00000568076 BCO2Q9BYV7 579 aa21.51■■□□□ 1.03
CLN3-230ENST00000568076 ZNF518BQ9C0D4 1074 aa21.51■■□□□ 1.03
CLN3-230ENST00000568076 SDCBP2Q9H190 292 aa21.51■■□□□ 1.03
CLN3-230ENST00000568076 PABPC3Q9H361 631 aaKnown RBP21.51■■□□□ 1.03
CLN3-230ENST00000568076 PARP2Q9UGN5 583 aa21.51■■□□□ 1.03
CLN3-230ENST00000568076 IP6K2Q9UHH9 426 aa21.51■■□□□ 1.03
CLN3-230ENST00000568076 IVNS1ABPQ9Y6Y0 642 aa21.51■■□□□ 1.03
CLN3-230ENST00000568076 UNCXA6NJT0 531 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 SHBGP04278 402 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 EIF4BP23588 611 aaKnown RBP21.5■■□□□ 1.03
CLN3-230ENST00000568076 GJC1P36383 396 aa21.5■■□□□ 1.03
CLN3-230ENST00000568076 CDH8P55286 799 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms